Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n05
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0184 + 13560830-13562981,13563604-13564088                       30   2.0  
11_01_0205 + 1617044-1617197,1617845-1618233                           28   7.9  

>01_03_0184 + 13560830-13562981,13563604-13564088
          Length = 878

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 542 FHHYNNC*LTCLKKDEKKTFNSILF 616
           F+H   C L C K D+ K F SILF
Sbjct: 393 FYHQITCVLICGKNDQAKQFGSILF 417


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 119 LYKINTYCYRDKYIYSE 69
           +YK++ Y Y+DK++Y E
Sbjct: 1   MYKVHFYIYKDKFVYKE 17


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,023,774
Number of Sequences: 37544
Number of extensions: 353745
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)