Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10n05
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97003-4|AAB52268.2|  370|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF024498-2|AAF39804.2|  318|Caenorhabditis elegans Serpentine re...    29   3.1  
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    29   5.4  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>U97003-4|AAB52268.2|  370|Caenorhabditis elegans Hypothetical
           protein F47C10.3 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = +3

Query: 42  KIGVHHYAFLTIYVFISVTICIDFI*SVCLRHHLNSLKQDTKLKSLMI 185
           ++ +H ++FLTIYV + + + +DF+ ++     +  L ++  LK+L++
Sbjct: 172 EVNIHEWSFLTIYVSVEMFLNLDFMQNIDNEDKI-VLLREFSLKTLVL 218


>AF024498-2|AAF39804.2|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein101 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 447 KTKFQNVFL--CIQSMKIAALKNVHNTFKLLVTEELVFNNHCSCFTN 313
           K K + +F+  CIQ   + A+ ++++TF  L++++ +F   C  F+N
Sbjct: 229 KQKSRKLFIQSCIQDW-LFAIDSINSTFVDLISDDAIFTFFCDIFSN 274


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -3

Query: 827 KRKVAQCVRKSQED 786
           K+KVAQCVR+SQE+
Sbjct: 151 KKKVAQCVRRSQEE 164


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 786 LFLITVPFFIICLDCESDW*DVVRTLSGR 700
           + LI +P  ++C DC SD  DV+  L GR
Sbjct: 75  ILLIFIPIVVLCDDCTSDE-DVIADLLGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,010
Number of Sequences: 27780
Number of extensions: 382405
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)