Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m24
         (743 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           27   0.46 
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    23   10.0 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   10.0 

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 597 AANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS--QVAKVGQGGAGD 424
           ++++P    +G G    VNN +++P       Q  PSQ     +QS  Q+   G  G   
Sbjct: 257 SSSLPLSSVIG-GPPGMVNNGLRAPPSSQQQPQQQPSQQPQPSSQSNAQLTNGGSNGLLG 315

Query: 423 QSSQ 412
            SSQ
Sbjct: 316 SSSQ 319


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
            protein.
          Length = 1087

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 393  LQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACA 277
            +QE  ++V    +  +  EE L+   D+F+D  ++S  A
Sbjct: 949  MQEFAQKVQRIEKQQKIDEEALIDPPDEFLDPIMSSLMA 987


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 168 PYKRAAVTEAHRQRMALIRKSI 103
           P +RAA +E H++R + ++++I
Sbjct: 335 PDERAAASEIHQERRSELKRAI 356


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,090
Number of Sequences: 2352
Number of extensions: 12249
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)