Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m22
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    30   2.3  
AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    29   3.9  
Z81073-1|CAB03029.1|  645|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 463 SNARGRAKPLPTA*YSPLIFFKYTSLIYMYRCIFIRSL 576
           +N+R +A P+ T  Y   + F +   +Y YR  +IRS+
Sbjct: 33  NNSRFKALPILTVFYCQTVCFGWAGFVYNYRRWYIRSI 70


>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 635 SCANLMSFT---EYIV*YTRCPDNERMKIHLYIYIKEVYLKKISGE 507
           SCA + ++    + +V Y   PD    KI LYI   ++ LK I GE
Sbjct: 142 SCAAISTYLNSEKSLVEYKSMPDRPPTKIQLYIKKHQIMLKGIGGE 187


>Z81073-1|CAB03029.1|  645|Caenorhabditis elegans Hypothetical
           protein F30F8.1 protein.
          Length = 645

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 120 MNDQFSKFITEINHISRKLFLHCDRYL 200
           MND ++++I ++N  +R   ++  RYL
Sbjct: 1   MNDSYAEYIAQVNEFTRNFCMNPQRYL 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,805
Number of Sequences: 27780
Number of extensions: 339769
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)