Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m21
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 33 0.27
08_02_0894 + 22346027-22347925 32 0.63
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 32 0.63
02_01_0661 + 4931298-4931302,4932762-4933674,4935472-4935627,493... 32 0.63
11_01_0472 + 3656471-3656780,3656902-3656996 31 1.5
09_04_0506 - 18188785-18190599 31 1.5
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 31 1.5
02_01_0305 + 2041370-2043114,2043764-2044121 30 1.9
04_03_0090 - 11037111-11037568,11039606-11039671,11040524-110407... 29 4.4
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 25 5.1
07_03_0667 + 20517700-20517981 29 5.9
06_03_0854 + 25400855-25403741,25406174-25407708 28 7.8
04_04_0680 - 27217563-27220088 28 7.8
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 7.8
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 28 7.8
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -3
Query: 127 NRSKRGRTKEEVASEIRKSVNEDASRTYEEENRTIRI 17
NRSK RTK V+ + SV+ ++S++Y +NR RI
Sbjct: 94 NRSKEVRTKMSVSKACKHSVSAESSQSYYAKNRRQRI 130
>08_02_0894 + 22346027-22347925
Length = 632
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 310 VRSIGGRRCGGRWLCSCRSVSFVPDDRVEPSGEARDFGKSVGFGVDCACV 459
V S+ GRR R L S R + +PDD V + G+G +CA V
Sbjct: 140 VSSLVGRRSSYRSLPSIREIDLLPDDAVSDLRAIASRMAAAGYGRECAQV 189
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 31.9 bits (69), Expect = 0.63
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Frame = -2
Query: 617 SLTRRSAKKTPDYF-PAIIFASEVFKIQTDISADKTTAAL*FKTIL*SRYLRSYTHAQST 441
SL + D F PAI + I+T + T + +L +Y ++ +ST
Sbjct: 545 SLLALDTNREKDRFSPAIFSPAASQNIRTPTNRTLYTFDSRIRIML--KYAFAWRSLRST 602
Query: 440 --PKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSLLK 267
P P FP+ SP T + + + + PP PP ++ PP P L V LL
Sbjct: 603 WGPTPPPFPRLADSPWAPT-DAKESQPSISVAHLFPPLISPPKVIPPPPLPPLLV--LLP 659
Query: 266 QTNSC 252
T+ C
Sbjct: 660 PTSPC 664
>02_01_0661 +
4931298-4931302,4932762-4933674,4935472-4935627,
4935736-4935969
Length = 435
Score = 31.9 bits (69), Expect = 0.63
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 110 STLGSVVVDVFSLAKFCKYDSYRLMWGIT 196
++L + VD+F L +FC YD +L+W ++
Sbjct: 265 ASLVTATVDLFPLIEFCAYDMRQLLWSLS 293
>11_01_0472 + 3656471-3656780,3656902-3656996
Length = 134
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 440 PKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPP 303
P P+ + L SP LSS + LQ P++ PP L PP
Sbjct: 31 PSPSSLRRLLTSPPHRLLSSHGRRPTLQTLPRCRPRKSPPRALIPP 76
>09_04_0506 - 18188785-18190599
Length = 604
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 347 HLPPQRLPPILLTPPKSPQLQV 282
HLPPQ PP+ PP P Q+
Sbjct: 129 HLPPQPQPPVAAAPPPPPHNQI 150
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = -1
Query: 228 NVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQKYGKALMKMPAE 49
+V +E + ++ M Y+ LQN+ K+K + + +E+ KLLQ+ + K E
Sbjct: 68 SVKIESVVPDDLMAKMDRYKKDLQNMKKQKEAVESKQIKQEEGYKLLQQEQRK-WKRDKE 126
Query: 48 LMKKKIEQ 25
+ K+E+
Sbjct: 127 NLNSKLEK 134
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 464 SYTHAQSTPKPTLFPKSLASPDGSTLSSGTKETD 363
S T Q TP PT P ++ S + +SS + ET+
Sbjct: 376 SSTSRQQTPSPTSLPAAIPSQPAAAISSSSSETN 409
>04_03_0090 -
11037111-11037568,11039606-11039671,11040524-11040724,
11041049-11041157
Length = 277
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 207 EDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQK 100
E ++ H+ + + Y N K+K + TDP + E K
Sbjct: 211 EHTNMKEHLGVIQDYTSNRKKDKLNLITDPDLHEHK 246
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 25.4 bits (53), Expect(2) = 5.1
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = -2
Query: 455 HAQSTPKPTLFPK-----SLASPDGSTLSSGTKETDLQ-LQSHLPPQRLPP 321
H Q+ P P +P + P + + G Q L SHLPP + PP
Sbjct: 16 HPQAPPPPPQYPHHPPPYAAPLPQYAPYARGMPPPQAQQLYSHLPPHQQPP 66
Score = 21.8 bits (44), Expect(2) = 5.1
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Frame = -2
Query: 347 HLPP--QRLPPILLTPPKSPQLQ 285
H PP PP PP P+LQ
Sbjct: 87 HPPPFDSAPPPAAAPPPSDPELQ 109
>07_03_0667 + 20517700-20517981
Length = 93
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 295 GDFGGVRSIGGRRCGGRWLCSCRS 366
GD G R+ G RR G R LC+CR+
Sbjct: 31 GDADGGRAKGKRRGGERELCTCRN 54
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 434 PTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSS 276
PT+ P + SP STL+ G + PP +P +L P P + ++
Sbjct: 1262 PTMEPNATISPGSSTLAPGASAA---APAVAPPTAVPEAILVPMPPPAVAAAA 1311
>04_04_0680 - 27217563-27220088
Length = 841
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 561 CVGGVQDPNRHFCRQDNGGAVIQND 487
CVGG D R C NGG + ND
Sbjct: 611 CVGGCSDSKRCACAVKNGGEIPFND 635
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 164 YDSYRLMWGITELSSAGSRGTFIGSNGKVSMNLFA 268
Y + M G ++S++G G G G+VS+N+F+
Sbjct: 272 YIKSKTMHGAGKISASGGNGLAGGGGGRVSINVFS 306
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 437 KPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPP 303
+P P ++P + +SG + Q + PP LPP L PP
Sbjct: 175 QPGSVPWGSSAPPSAGNASGLSVPPMYWQGYYPPGGLPPHLQQPP 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,838
Number of Sequences: 37544
Number of extensions: 484337
Number of successful extensions: 1807
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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