Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m21
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical ... 31 0.75
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 31 0.75
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 31 0.75
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 1.3
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 3.0
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 29 4.0
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 29 4.0
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 29 4.0
AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic helix-l... 29 4.0
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 29 5.3
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 29 5.3
Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 7.0
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 7.0
U61953-3|AAC48071.3| 491|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF100307-9|AAC68938.1| 321|Caenorhabditis elegans Hypothetical ... 28 9.2
AF036706-12|AAK39280.1| 343|Caenorhabditis elegans Hypothetical... 28 9.2
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 28 9.2
>AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical
protein B0041.2c protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 255 MLTLPFDPINVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQK 82
+L+LP P NV E +VIP + YE L+ L + + S + + +E+K+ + K
Sbjct: 233 LLSLPHIPPNVLDLLTEILAVIPRLDDYEDELKKLGENRPSNYDEGASKEEKESWMSK 290
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 255 MLTLPFDPINVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQK 82
+L+LP P NV E +VIP + YE L+ L + + S + + +E+K+ + K
Sbjct: 462 LLSLPHIPPNVLDLLTEILAVIPRLDDYEDELKKLGENRPSNYDEGASKEEKESWMSK 519
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 255 MLTLPFDPINVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQK 82
+L+LP P NV E +VIP + YE L+ L + + S + + +E+K+ + K
Sbjct: 544 LLSLPHIPPNVLDLLTEILAVIPRLDDYEDELKKLGENRPSNYDEGASKEEKESWMSK 601
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
protein ZC373.4 protein.
Length = 1211
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 159 QNLAKEKTSTTTDPSVEEQKKKLLQKYGKALMKMPAELMKKK 34
+ +A ST T+ + +KKKL++ G A ++ P ELM K+
Sbjct: 434 KKIANADGSTKTEKTSSVKKKKLVETDGDAGLRPPPELMTKR 475
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -1
Query: 243 PFDPINVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQKY 79
P++P++ P +PAE N V + + ++ ++ A + T P+V+ + +Y
Sbjct: 1682 PYEPLSPP-QPAEPNHVEEYQNTVDTIIEKSATPAPAPVTQPAVQPAPGPVEHRY 1735
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = -2
Query: 464 SYTHAQSTPKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQ 285
S T+ T P L SP S SG +Q H P PP + K +
Sbjct: 670 SPTYQAFAASVTTKPSILESPSTSGDISGPASVPVQASQHPPKIITPPSASSKRKEQEAA 729
Query: 284 VSSLLKQTNSCSL 246
++ L+ + SC +
Sbjct: 730 MAPLVNRQQSCDV 742
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = -2
Query: 464 SYTHAQSTPKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQ 285
S T+ T P L SP S SG +Q H P PP + K +
Sbjct: 670 SPTYQAFAASVTTKPSILESPSTSGDISGPASVPVQASQHPPKIITPPSASSKRKEQEAA 729
Query: 284 VSSLLKQTNSCSL 246
++ L+ + SC +
Sbjct: 730 MAPLVNRQQSCDV 742
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = -2
Query: 464 SYTHAQSTPKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQ 285
S T+ T P L SP S SG +Q H P PP + K +
Sbjct: 670 SPTYQAFAASVTTKPSILESPSTSGDISGPASVPVQASQHPPKIITPPSASSKRKEQEAA 729
Query: 284 VSSLLKQTNSCSL 246
++ L+ + SC +
Sbjct: 730 MAPLVNRQQSCDV 742
>AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic
helix-loop-helix leucinezipper WBSCR14-like protein
protein.
Length = 913
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = -2
Query: 464 SYTHAQSTPKPTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQ 285
S T+ T P L SP S SG +Q H P PP + K +
Sbjct: 574 SPTYQAFAASVTTKPSILESPSTSGDISGPASVPVQASQHPPKIITPPSASSKRKGQEAT 633
Query: 284 VSSLLKQTNSCSL 246
++ L+ + SC +
Sbjct: 634 MAPLVNRQQSCDV 646
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 413 LASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVS 279
L + G+ S +++ L SH PP PP PPK ++ V+
Sbjct: 254 LGTESGARHGSISRQATLTFVSHKPPPVNPPQPAVPPKPAKISVA 298
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 1 YFHLFIFVLFYFLLHKFCWHLH*RFSVFLKQLLLLFFHA 117
YFHL +++F F W + + + ++L FFHA
Sbjct: 217 YFHLCYYLIFKFGYSTSMWLYKSKRQIIAQGIILTFFHA 255
>Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical
protein F38C2.7 protein.
Length = 203
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 391 LCHLGRRKQ--TYNYRAIYHHSVYHQYF*H-HRNLLNYKSVLC 272
LC RR Q Y + + HSV+ F RN NYK+VLC
Sbjct: 93 LCGFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYKTVLC 135
>Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical
protein C35D6.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 391 LCHLGRRKQ--TYNYRAIYHHSVYHQYF*H-HRNLLNYKSVLC 272
LC RR Q Y + + HSV+ F RN NYK+VLC
Sbjct: 93 LCGFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYKTVLC 135
>Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical
protein F13B12.4 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -1
Query: 171 ESYLQNLAKEKTSTTTDPSVEEQKKKLLQKYGKALMKMPAELMKKKIEQYEYK 13
E+Y+ L ++E++K K ++ +G ++K+P L K +++ K
Sbjct: 125 EAYMCTLVNVPYYAVVADNLEKEKVKQIESFGGKIIKVPVALRNAKAKEFADK 177
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 207 EDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQKYGKALMKMPAELMK 40
EDN + S+ E Y +L E T + ++E++K +L G+ L K AE +K
Sbjct: 831 EDNLMDHVFSMLEEYTSSLEVEVGERTKELTLEKKKSDIL--LGRMLPKQVAERLK 884
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 434 PTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSLLKQTNS 255
P + LA D S+ S TK++ +++ P PP P ++PQ ++ L +Q N
Sbjct: 272 PDTYDTFLAELDFSSSESPTKQSPMEMNGDRMPSTAPP----PAQNPQ-HIAQLQQQQNK 326
Query: 254 CSL 246
L
Sbjct: 327 MRL 329
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 434 PTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSLLKQTNS 255
P + LA D S+ S TK++ +++ P PP P ++PQ ++ L +Q N
Sbjct: 294 PDTYDTFLAELDFSSSESPTKQSPMEMNGDRMPSTAPP----PAQNPQ-HIAQLQQQQNK 348
Query: 254 CSL 246
L
Sbjct: 349 MRL 351
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 434 PTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSLLKQTNS 255
P + LA D S+ S TK++ +++ P PP P ++PQ ++ L +Q N
Sbjct: 272 PDTYDTFLAELDFSSSESPTKQSPMEMNGDRMPSTAPP----PAQNPQ-HIAQLQQQQNK 326
Query: 254 CSL 246
L
Sbjct: 327 MRL 329
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 434 PTLFPKSLASPDGSTLSSGTKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSLLKQTNS 255
P + LA D S+ S TK++ +++ P PP P ++PQ ++ L +Q N
Sbjct: 294 PDTYDTFLAELDFSSSESPTKQSPMEMNGDRMPSTAPP----PAQNPQ-HIAQLQQQQNK 348
Query: 254 CSL 246
L
Sbjct: 349 MRL 351
>U61953-3|AAC48071.3| 491|Caenorhabditis elegans Hypothetical
protein R08C7.5 protein.
Length = 491
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 446 STPKPTLFPKSLASPDGSTLSSG-TKETDLQLQSHLPPQRLPPILLTPPKSPQLQVSSL 273
S+P P L PK++ P + T ++L + PP ++P + PPK + + S+
Sbjct: 297 SSPPPKL-PKTVVQPSKEEKPTAKTAAPPVKLLTSSPPPKIPKTVAQPPKEKKPVMESV 354
>AF100307-9|AAC68938.1| 321|Caenorhabditis elegans Hypothetical
protein T12B5.11 protein.
Length = 321
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 118 WICCSRCFLFGQILQIRLIQAHVGYH*VIFRWF 216
W C +C LFG L+ +LI H+ +H F+WF
Sbjct: 208 WKCAKKCSLFGDKLENKLID-HL-FH---FQWF 235
>AF036706-12|AAK39280.1| 343|Caenorhabditis elegans Hypothetical
protein T07A9.8 protein.
Length = 343
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 196 SDTPHEPV*VVFAKFGQRENIDYNRS---KRGRTKEEVASEIRKSVNEDASRTYEE 38
S+ P EP ++ K EN R K+ + K EVA + ++ N+D + EE
Sbjct: 68 SENPEEPPLILEPKSSSDENTKKKRKRGPKKKKFKPEVAGKAAETENDDVAAAPEE 123
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 138 TSTTTDPSVEEQKKKLLQKYGKALMKMPAELMKKKIEQYEYK*MEI 1
++ TT P V + K + + KAL +P E KK++++ K M+I
Sbjct: 88 SAPTTSPRVYKLKSEARKSLRKALRGVPPEKRKKQLKKMGKKMMKI 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,792
Number of Sequences: 27780
Number of extensions: 411015
Number of successful extensions: 1702
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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