Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m21
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.28 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.48 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   4.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   7.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 376 RRKQTYNYRAIYHHSVYHQYF*HHRNLLNYKSVLC 272
           R  +  NY  +YH   +H +  +H  +L +   LC
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLC 297


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 383 MTESSHLEKLETLGKAWVLV*TAHVCKNEDTAIRV 487
           +TE + + K+ET+G A+++V  A V K  D A RV
Sbjct: 459 LTERNRVYKVETIGDAYMVVSGAPV-KENDHADRV 492


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 550 CSRSKQTFLQTRQRRRCDSKRY 485
           C   K   +  RQR RC   RY
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRY 167


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 550 CSRSKQTFLQTRQRRRCDSKRY 485
           C   K   +  RQR RC   RY
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRY 167


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 148 QRENIDYNRSKRGRTKEEVASEIRKSVNEDASRTYEEEN 32
           +RE   Y  + +GR+++    E  K     +S  Y  +N
Sbjct: 275 EREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 148 QRENIDYNRSKRGRTKEEVASEIRKSVNEDASRTYEEEN 32
           +RE   Y  + +GR+++    E  K     +S  Y  +N
Sbjct: 286 EREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKN 324


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 427 SVGFGVDCACV*ERRYRDQSIVLNH 501
           + GF  +C C  E   +++ I L+H
Sbjct: 84  TTGFSKECYCCRESYLKERHITLHH 108


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 427 SVGFGVDCACV*ERRYRDQSIVLNH 501
           + GF  +C C  E   +++ I L+H
Sbjct: 84  TTGFSKECYCCRESYLKERHITLHH 108


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 476 RYLRSYTHAQSTPKPTLFPKSLASPDGSTL 387
           ++LR++     T   ++   SLASPD S+L
Sbjct: 127 QHLRTHLRGTLTVNVSVLLLSLASPDESSL 156


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 148 QRENIDYNRSKRGRTKEEVASEIRKSVNEDASRTYEEENR 29
           ++E +   R+ R R       E R   NE++ R Y E ++
Sbjct: 258 EKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETSK 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,570
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)