Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m20
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0061 - 11833894-11834377,11834417-11834499                       27   5.2  
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979...    27   6.9  
11_03_0016 - 8981218-8981290,8981512-8981558,8981688-8981842,898...    26   9.1  
08_02_1633 + 28392378-28393445                                         26   9.1  
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011     26   9.1  

>08_02_0061 - 11833894-11834377,11834417-11834499
          Length = 188

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 27  YRSVCDHLTIPMLVTERKPTSKHTATVKTITYVKIQNK 140
           Y+   DH   P+   ER PTS H       +YVK+  +
Sbjct: 64  YKKTYDHCMEPLEGEERWPTSDHHPKPSPPSYVKMPGR 101


>02_05_0339 -
           28094581-28094817,28095011-28096381,28097713-28097922,
           28098047-28098283,28098677-28099041,28099661-28099970
          Length = 909

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +1

Query: 55  YPCLLRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPY-WRSIHCSPVEQSQALW 219
           YP  +  +  R+ T P   P    K R    I  + +P  WR +H   V Q   +W
Sbjct: 710 YPDRVMRQLGRKQTIPPPPPHDESKLRQLHKINHTGKPRDWRKLHAEYVNQYNRIW 765


>11_03_0016 -
           8981218-8981290,8981512-8981558,8981688-8981842,
           8981930-8982023,8982158-8982231,8982250-8982283,
           8982689-8982807,8983586-8983673,8983901-8983963,
           8983964-8984018,8984527-8984575,8985693-8985753,
           8986288-8986638
          Length = 420

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 142 QHIPTSTEPYWRSIHCSPVEQSQALWSISLSVFRCCSYL 258
           +H+  S++ +W S H S V+++Q    I   + R C ++
Sbjct: 313 KHVHRSSDGWWGSFHGSDVKKNQLASEIIDHLLRECCWM 351


>08_02_1633 + 28392378-28393445
          Length = 355

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 64  LLRSESRRRSTQPRLKPSHTLKSRIKQH-IPTSTEPYWRSIHCSPVEQSQA-LWSISLS 234
           LL    R R  + R++ SH+    ++QH  P+S+     S       QS A  WS++ S
Sbjct: 148 LLTDAERLRDARRRIRVSHSTHELVQQHGSPSSSSGSPSSASSRTSSQSHASSWSVASS 206


>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
          Length = 376

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 KPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQS 207
           KPS+  +  +    PTS EP    ++CS  + S
Sbjct: 244 KPSNKKQKTVANSSPTSVEPADLDVYCSDAQPS 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,243
Number of Sequences: 37544
Number of extensions: 196985
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)