Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m20
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-6|ABA00176.1|  287|Caenorhabditis elegans Hypothetical pr...    29   0.86 
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   0.86 
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      26   8.1  

>U67953-6|ABA00176.1|  287|Caenorhabditis elegans Hypothetical
           protein ZC13.10 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +1

Query: 76  ESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQALWSISLSVFRCC 249
           ES+ R     L P H +  R       ST   W SI  S +  S+  +    S  +CC
Sbjct: 58  ESKERCNNDLLIPCHLMPPRDPYASRLSTSSAWSSIRLSVLSLSRVFFLKPCSKHKCC 115


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 73  SESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQALWSISLS 234
           SE+ RRST    K S   +  +KQ  P+ +E Y    + +P+   ++   +  S
Sbjct: 341 SENERRSTATASKKSRMDELEVKQEPPSDSEDYIAKTNLAPIRVEKSAEKVEKS 394


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 154  LVYAVLFWILTYVMVLTVAVCFDVGFRSVTSMGIVKWSQTDL 29
            L+Y     I+TYV+   +AV  +V F    S+ +  WS  ++
Sbjct: 932  LLYFKAMGIVTYVLPYAIAVVLNVSFALGRSLWLTAWSDANI 973


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 223 CSIELGFVQQDYNEWNANTALWMLVY--AVLFWILTYVMVL 107
           C I +       + W A T   +L+Y  A+LF++ TY+M++
Sbjct: 79  CLISISSAWSSPDLWLAETIFSLLMYLIAILFFMYTYLMII 119


>U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical
           protein F55E10.5 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -1

Query: 340 FDLMK*NLTYLIYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNEWNANTAL 161
           FD++   LTY   +    +     YT + MN   T      + L   +    +       
Sbjct: 40  FDILSEFLTYKYVVNAITLNLTIKYTSQKMNETHT-DSIIDVTLAIEETSQKQHQ----- 93

Query: 160 WMLVYAVLFWILTYVMVLTVAVCFDVG 80
            M+  AVL++IL  ++V+ +  C D+G
Sbjct: 94  -MITVAVLWFILAILLVMVIFAC-DLG 118


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 67  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 213
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 777 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 825


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 67  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 213
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 775 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 823


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 140 NSIYQHPQSRIGVPFIVVLLNKAKLYGAFLFRCFDV 247
           NS YQHP+ +   P   +L+N     G   F   DV
Sbjct: 482 NSTYQHPKKKEKSPKNAILINLKNTLGGEKFTVEDV 517


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 67  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 213
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 775 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 823


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,171,520
Number of Sequences: 27780
Number of extensions: 187664
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)