Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m20
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 304 YLATQNIAAMTSYTPEDMNNIETPKEKCSIEL 209
           Y +  N    T Y PE  +N++   EK  I+L
Sbjct: 386 YYSKHNTQQFTQYIPESSSNLQ---EKTKIDL 414


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 130 ILTYVMVLTVAVCFDVGFRSVTSMGIVKW 44
           ++T  +V+T+AV  +V FRS  +  + +W
Sbjct: 309 LVTLSVVVTIAV-LNVNFRSPVTHRMARW 336


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 173 GVPFIVVLLNKAKLYGAFLFRCFDVVHIFRSIRCHCCYILC 295
           GVP  ++ L+  ++        F +  IF+ I    C + C
Sbjct: 69  GVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 173 GVPFIVVLLNKAKLYGAFLFRCFDVVHIFRSIRCHCCYILC 295
           GVP  ++ L+  ++        F +  IF+ I    C + C
Sbjct: 122 GVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSC 162


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 317 NLFNLFGYTKYSSNDILYS*RYEQHRNTEREMLH 216
           +LF   GY     N I+Y+      R   RE+L+
Sbjct: 410 SLFLWLGYCNSLLNPIIYATLNRDFRKPFREILY 443


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 198 NRTTMNGTP 172
           N TTMNG+P
Sbjct: 280 NSTTMNGSP 288


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 245 HRNTEREMLHRAW 207
           HRN++R++  R W
Sbjct: 110 HRNSDRDLNIRKW 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,948
Number of Sequences: 438
Number of extensions: 2253
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)