Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m19
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   6.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = +1

Query: 13  LNKTNWVRLRDQCSTLRTNRLERETFYLHLT*AREAFSFVSECTQATRELQCK 171
           L    W  LR + S + T+   +E FYL +  +    +++ +  +    ++C+
Sbjct: 123 LEVERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEKNEPIECR 175


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 226  YRDVH*NLESSKLNRH 179
            YR  H NL+  +L+RH
Sbjct: 1441 YRTAHGNLDELQLSRH 1456


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 226  YRDVH*NLESSKLNRH 179
            YR  H NL+  +L+RH
Sbjct: 1437 YRTAHGNLDELQLSRH 1452


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 379 YGINCKTIMYNLI 341
           Y  NCK + YN+I
Sbjct: 347 YNNNCKKLYYNII 359


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 407 KNL*RYYSNVRNKLQNYNV 351
           KN  R+Y + ++ +QNY++
Sbjct: 571 KNQCRHYLDAKSSVQNYSL 589


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 389 YSNVRNKLQNYNVQFN 342
           YSN  N   NYN  +N
Sbjct: 91  YSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 389 YSNVRNKLQNYNVQFN 342
           YSN  N   NYN  +N
Sbjct: 91  YSNYNNYNNNYNNNYN 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 354  IIVLQFIPYITVISS*VFILFKCMFIGFMF 443
            I+V  ++P +    S V +L   + + F+F
Sbjct: 989  IMVSDYLPLVAATLSGVLVLLVIIVLAFVF 1018


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,002
Number of Sequences: 438
Number of extensions: 2186
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)