Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m18
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    25   5.6  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    25   5.6  
Z81497-4|CAB04079.2|  458|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 115 VTLNYLCNFKRFVVLL*SN-QYVHIINIIINV 23
           V ++YLCN KR +  L  N ++ + + +++N+
Sbjct: 291 VQISYLCNNKRNIRTLFKNFKFANFVRVVLNM 322


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 115 VTLNYLCNFKRFVVLL*SN-QYVHIINIIINV 23
           V ++YLCN KR +  L  N ++ + + +++N+
Sbjct: 273 VQISYLCNNKRNIRTLFKNFKFANFVRVVLNM 304


>Z81497-4|CAB04079.2|  458|Caenorhabditis elegans Hypothetical
           protein F10C2.7 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 207 SILIYGNIYCLLGPNVVRIYVCGS 136
           S++++  +Y L+G N    Y CG+
Sbjct: 346 SVIMFSIVYTLMGTNCGGFYKCGT 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,733,977
Number of Sequences: 27780
Number of extensions: 51448
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)