Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m18
         (209 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.52 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   6.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 0.52
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 193 WKYILFTWT*RSPNICMWLIRN*NFYVTLNYLCNF-----KRFVVLL*SNQYVHIINIII 29
           WKYI + +   S       I++ ++  T+NYL +      K FV+++  N     +N+I 
Sbjct: 35  WKYIDYDFG--SDEKRQAAIQSGDYNYTMNYLLDTDQWGDKTFVIIMKFNGVPSSLNVIT 92

Query: 28  NVT 20
           N T
Sbjct: 93  NKT 95


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 116 IKILISNEPHTYIRTTLG 169
           +K+L+   P T   TTLG
Sbjct: 71  LKVLVPLGPETSRHTTLG 88


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 134 NEPHTYIRTTLGPSK 178
           N  H+Y+ T   P+K
Sbjct: 94  NGKHSYLHTITSPNK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,381
Number of Sequences: 438
Number of extensions: 677
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)