Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m17
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    30   2.5  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    29   4.3  

>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 675 NFTSRSCRKLP*NIALNRYIDTGRADNGMLINSID 571
           ++TS+  +K P N+AL   IDT R  +GM   +I+
Sbjct: 601 DYTSKEMKKRPPNLALQTTIDTIRQSSGMETRTIN 635


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 GRQRCGTLDNNTMCVASKSVLFFIPQV-DGRAHSLPG 296
           G++ CG  DN T  V   ++ FFI +V +G AH   G
Sbjct: 255 GKEDCGKSDNTTKLVLFVTISFFILEVPNGFAHVTAG 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,358
Number of Sequences: 27780
Number of extensions: 302862
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)