Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m17
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.4  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/50 (18%), Positives = 28/50 (56%)
 Frame = -1

Query: 761 NNRY**SWSGY*SRNLYVCYRFSIRIFKLISRLEVAENYLETLR*TDILI 612
           NN+    ++ Y +   ++C+++ +R  ++  +  + +N+++  R  +I I
Sbjct: 36  NNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAI 85


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 136 HQYIIICILSVMT 98
           H YI+I ILS++T
Sbjct: 3   HNYIVILILSLLT 15


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 136 HQYIIICILSVMT 98
           H YI+I ILS++T
Sbjct: 3   HNYIVILILSLLT 15


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 748 NNPGQDTNPEICMYAIDSRYEFSS*FHVS 662
           N+  Q  NP+I  Y    RY+ +  F +S
Sbjct: 307 NHDTQRDNPQILTYKYSKRYKMAVAFMLS 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,128
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)