Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m16
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DMW5 Cluster: Chromosome undetermined scaffold_57, wh...    41   0.040
UniRef50_Q8IKX2 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  

>UniRef50_A0DMW5 Cluster: Chromosome undetermined scaffold_57, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_57,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 417

 Score = 40.7 bits (91), Expect = 0.040
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = -3

Query: 617 QRLLLVKYDKQSNNLM--I*SFLLIDIYGFRYTISWNHIFGTFTQ 489
           ++L+++KYDKQ N +M  I   L+I I G+R   +WN IFG+F++
Sbjct: 178 KQLIILKYDKQINMIMWLIGFRLIIQIVGWRDQNAWNQIFGSFSR 222


>UniRef50_Q8IKX2 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1844

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 218  NFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRILTQYRIFLEIVHF*CEKAI*E 397
            N  NSS N DK       K+   +  Y KNP + KC   + +Y++ +E     C   + +
Sbjct: 1087 NCSNSSNNFDKKDNMQNQKIEQ-EMCYRKNPLIYKCDEDMLKYKMLIENN---CNVNL-K 1141

Query: 398  YIGSSYMCYEKIYFLTGSKYTITNI 472
            Y+      Y    F    K+T+ N+
Sbjct: 1142 YLSKYGFLYLIFLFFKIDKHTVQNV 1166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,796,419
Number of Sequences: 1657284
Number of extensions: 11494718
Number of successful extensions: 22565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22544
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)