Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m16
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   6.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   6.4  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 273  LVFVFVFTLSMF*LLLTKLIHNF 205
            LVFVF F L +    +  L H F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 273  LVFVFVFTLSMF*LLLTKLIHNF 205
            LVFVF F L +    +  L H F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 273  LVFVFVFTLSMF*LLLTKLIHNF 205
            LVFVF F L +    +  L H F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 273  LVFVFVFTLSMF*LLLTKLIHNF 205
            LVFVF F L +    +  L H F
Sbjct: 1328 LVFVFFFALILVIQFVAMLFHRF 1350


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 239 NIDKVKTKTKTKLRSFDSIYEKNPGV 316
           N+  V  KT+ ++  F    EKNP +
Sbjct: 352 NLSAVDQKTRQEVHMFLMAIEKNPPI 377


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 239 NIDKVKTKTKTKLRSFDSIYEKNPGV 316
           N+  V  KT+ ++  F    EKNP +
Sbjct: 352 NLSAVDQKTRQEVHMFLMAIEKNPPI 377


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 398 YIGSSYMCYEKIYFLTG 448
           Y GSS++C E  Y + G
Sbjct: 274 YAGSSFICPEFRYLMKG 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,636
Number of Sequences: 336
Number of extensions: 3530
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)