Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m16
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.3  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   2.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   2.3  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   4.0  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   7.0  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   9.3  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 215 INFVNSSQNIDKVK---TKTKTKLRSFDSIYEKNPGVTK 322
           I+ +NS  N+DKVK     + +  ++FDS  EK P + +
Sbjct: 149 ISILNSLDNLDKVKYLLHDSSSLTKAFDSYKEKRPSIVE 187


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 780 SDNFRVVARSTNEKKKVETVA*LNRNK 700
           SD+  V  RST+EK+KVE+V  ++ +K
Sbjct: 49  SDSKNVDGRSTSEKRKVESVKLVDESK 75


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 304 KSWCYQMFTHINSISNIFGNCTLLMRKGNI 393
           KS+CY  FT +   SN+  N   LM   NI
Sbjct: 713 KSYCYTTFTALRKSSNLILNLFSLMVDANI 742


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 481 FFTCVNVPKM*FHEIVYRKP*MSINKND*IIRLLDCLSYLTSKSLC 618
           FFT + V  +    +   +P  S+N+ND  +    C+S L + S+C
Sbjct: 9   FFTAIYVVSLYTFPVARPRP--SLNRNDPKVITARCISVLLASSVC 52


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/42 (21%), Positives = 26/42 (61%)
 Frame = +2

Query: 197 SKIKLCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTK 322
           ++++   N   + + ++ ++TK +T+ + ++++ EK   VTK
Sbjct: 139 TQVEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAAVTK 180


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 121 YIFNNNHKYLQHLCLFFTSYITC 189
           Y  +N H  L  +CLF   Y++C
Sbjct: 469 YREDNEHSGLVRICLFIVHYLSC 491


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 236 QNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRILTQYRIF 355
           +  +K+K  + T  ++   I E   G  KCL+++ Q RIF
Sbjct: 11  EETEKLKDSSSTDEKTRSEIVE---GYEKCLKLVLQLRIF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,684
Number of Sequences: 5004
Number of extensions: 56057
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)