Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m16
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    31   1.2  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    31   1.2  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    28   8.7  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    28   8.7  

>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 218 NFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRI--LTQYRIFLEIVHF*CEKA 388
           N  + ++N + V T     L SF  IYE NP   +C R   ++Q    L+I+ F  EK+
Sbjct: 809 NLESEAENPENVTTPEAILLASFFKIYEPNPTPVRCSRSTNISQAVEKLKILGFSAEKS 867


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever shorter
            telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 218  NFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRI--LTQYRIFLEIVHF*CEKA 388
            N  + ++N + V T     L SF  IYE NP   +C R   ++Q    L+I+ F  EK+
Sbjct: 966  NLESEAENPENVTTPEAILLASFFKIYEPNPTPVRCSRSTNISQAVEKLKILGFSAEKS 1024


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 34/134 (25%), Positives = 56/134 (41%)
 Frame = -1

Query: 619 DKDFY*LNMISNLII**FNHFY*LTFMVFDIQFRGITSLVHSRK*KNVVNISNCIFRASE 440
           +KDF  +     +++  F++F   TF+++ I    I     S+  K  V IS  +     
Sbjct: 47  EKDFPIVQFFYKMVL--FSYFLFSTFILYFIVLYLIVR--DSQAYKTSVIISFSLIFVES 102

Query: 439 KIYFLITHIR*PYIFLYCLFALKVYNFQKYSILS*YA*TFGNTRIFLINTVKRAXXXXXX 260
            I+ +I  I         LF L + N  KY +       F N++IFL+N VK+       
Sbjct: 103 YIFHVIQQI-----IHILLFLLAIANSIKYLLTL----KFSNSQIFLLNLVKKLNVVLIS 153

Query: 259 XXXFIYVLTTINKI 218
               +  L  +N I
Sbjct: 154 KDFLLLFLCYLNSI 167


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 534 SIYNFVESHLWYIHASKKTLSILVIVYLEPVRKYI 430
           ++YNF+ S +W I   K+     +   +E VR+ I
Sbjct: 527 ALYNFIRSKMWAIEPHKRPTVDQIYAIIEDVRQQI 561


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 534 SIYNFVESHLWYIHASKKTLSILVIVYLEPVRKYI 430
           ++YNF+ S +W I   K+     +   +E VR+ I
Sbjct: 596 ALYNFIRSKMWAIEPHKRPTVDQIYAIIEDVRQQI 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,642
Number of Sequences: 27780
Number of extensions: 297617
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)