Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m15
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0337 - 22454281-22456399,22458520-22459388                       30   2.8  
07_03_0820 - 21749477-21749866,21751192-21751590                       30   2.8  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    29   4.9  
11_06_0347 + 22555087-22555943,22556638-22558783                       29   4.9  
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    29   4.9  
11_03_0128 - 10437407-10438049,10438097-10438272                       29   6.4  
07_01_0089 - 687064-687543                                             28   8.5  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.5  

>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 360 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 488
           G +K C +  ++L  +V  +   +F +++ SH QT  P  + R
Sbjct: 508 GKVKSCQIHDMVLEYIVSKSGEENFITVIGSHWQTPFPSYKVR 550


>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1

Query: 514 LAFRLTLNGLEPTP*PRNRTKPDLILEELIP 606
           L FR+ L GL P P  RNR K D   EEL P
Sbjct: 219 LPFRVLLKGLLPHPLLRNRVKQD--FEELFP 247


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 326 ITGVSHRSQEQSEECRHCSSTGQERDTKRPRRRLSST 216
           I G  H S ++ EECR  +S GQ +     R+R S T
Sbjct: 486 IIGARHNSPQRKEECR-TNSPGQPKGHDEKRKRRSYT 521


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 360 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 488
           G +K C +  ++L  +V  +   +F +++ SH QT  P  + R
Sbjct: 504 GKVKSCQIHDMVLEYIVSKSGDENFITVIGSHWQTPFPSYKVR 546


>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 573 KTRFDPGGADTSGQVCRTCSRTNRITR 653
           K  +D  G DTSG VCR+ S  N I +
Sbjct: 8   KKGWDSNGMDTSGSVCRSSSDINYINQ 34


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 516 CFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTCSR 635
           C +A I  P     A++ H  R     A TS   CRTC R
Sbjct: 109 CPAAGIHRPDDGHRARQRHLPRRSRSTASTSSTTCRTCCR 148


>07_01_0089 - 687064-687543
          Length = 159

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/111 (22%), Positives = 39/111 (35%)
 Frame = -3

Query: 691 PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCDFLARALAQGHSMLAEKQE 512
           P  +RR    +  RV+ FV   VR    ++    G  +     L      G++ +    E
Sbjct: 40  PAALRRFLADE--RVV-FVGYGVRSDCRKLEEQHGLEVARTVELRSLAGMGNTSMQRMAE 96

Query: 511 IRRGWSQIRGLALGISVCPWDATMLEKWARCVSCTKSRRMIYLTAHCLRAP 359
              GW  +      +    WDA  L K     +C  +     L  H + AP
Sbjct: 97  EHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYACVDAYLSFRLAVHVVAAP 147


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -3

Query: 457 PWDATMLE----KWARCVSCTKSRRMIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSL 290
           PW++T+      K +    C K+   ++        PA+ EKY    IL    ++  N  
Sbjct: 436 PWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKILHAADVIDLNMA 495

Query: 289 KSADIVQVLAKSAIQ 245
            +   V++L +   Q
Sbjct: 496 NAFKNVKILCQCPCQ 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,047,248
Number of Sequences: 37544
Number of extensions: 481233
Number of successful extensions: 1349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)