Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m15
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein. 33 1.0
AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol 3-... 33 1.0
U05659-1|AAC50066.1| 310|Homo sapiens 17beta-hydroxysteroid deh... 31 7.2
CR541894-1|CAG46692.1| 310|Homo sapiens HSD17B3 protein. 31 7.2
BT019371-1|AAV38178.1| 260|Homo sapiens hydroxysteroid (17-beta... 31 7.2
BC034281-1|AAH34281.1| 310|Homo sapiens hydroxysteroid (17-beta... 31 7.2
AY341031-1|AAP88937.1| 310|Homo sapiens hydroxysteroid (17-beta... 31 7.2
AL160269-3|CAH71615.1| 310|Homo sapiens hydroxysteroid (17-beta... 31 7.2
>AF395444-1|AAM73708.1| 3521|Homo sapiens PI-3-kinase ATX protein.
Length = 3521
Score = 33.5 bits (73), Expect = 1.0
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 592 PGSNLVLCDFLARALAQGHSMLAEKQEIRRGWSQIRGLALGI--SVCPWDATMLEKW--A 425
P + LVL L LA H +L E ++ + Q LG+ + ++A + KW +
Sbjct: 39 PENKLVLVKQLDNILAAVHDVLNESSKLLQELRQEGACCLGLLCASLSYEAEKIFKWIFS 98
Query: 424 RCVSCTKSR-RMIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAK 257
+ S K +++YL A + EK +++Q+ + ++ L++ D ++L K
Sbjct: 99 KFSSSAKDEVKLLYLCATYKALETVGEKKAFSSVMQLVMTSLQSILENVDTPELLCK 155
>AB061371-1|BAB70696.1| 3657|Homo sapiens phosphatidylinositol
3-kinase-related protein kinase protein.
Length = 3657
Score = 33.5 bits (73), Expect = 1.0
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 592 PGSNLVLCDFLARALAQGHSMLAEKQEIRRGWSQIRGLALGI--SVCPWDATMLEKW--A 425
P + LVL L LA H +L E ++ + Q LG+ + ++A + KW +
Sbjct: 175 PENKLVLVKQLDNILAAVHDVLNESSKLLQELRQEGACCLGLLCASLSYEAEKIFKWIFS 234
Query: 424 RCVSCTKSR-RMIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAK 257
+ S K +++YL A + EK +++Q+ + ++ L++ D ++L K
Sbjct: 235 KFSSSAKDEVKLLYLCATYKALETVGEKKAFSSVMQLVMTSLQSILENVDTPELLCK 291
>U05659-1|AAC50066.1| 310|Homo sapiens 17beta-hydroxysteroid
dehydrogenase type 3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
>CR541894-1|CAG46692.1| 310|Homo sapiens HSD17B3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
>BT019371-1|AAV38178.1| 260|Homo sapiens hydroxysteroid (17-beta)
dehydrogenase 3 protein.
Length = 260
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
>BC034281-1|AAH34281.1| 310|Homo sapiens hydroxysteroid (17-beta)
dehydrogenase 3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
>AY341031-1|AAP88937.1| 310|Homo sapiens hydroxysteroid (17-beta)
dehydrogenase 3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
>AL160269-3|CAH71615.1| 310|Homo sapiens hydroxysteroid (17-beta)
dehydrogenase 3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 373 CLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDV 194
CL A ++ +L + ++PK+ L+S V+ + G+ F L + +N V
Sbjct: 17 CLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGIGKAYSFELAKRGLNVV 76
Query: 193 SIAKTLEELQ 164
I++TLE+L+
Sbjct: 77 LISRTLEKLE 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,158,436
Number of Sequences: 237096
Number of extensions: 2626343
Number of successful extensions: 6551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6551
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -