Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m12
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261... 33 0.22
02_01_0359 + 2578038-2578221,2578555-2578619,2583179-2583266,258... 33 0.22
04_03_0835 + 20178224-20179483 33 0.39
02_05_1071 - 33876061-33877308,33877593-33877898 30 2.1
08_02_0593 + 19078264-19078609,19078724-19082256 30 2.7
04_04_0505 + 25719959-25720052,25721548-25722266 30 2.7
02_01_0736 - 5490671-5491813 30 2.7
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 30 2.7
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 29 3.6
03_05_0145 + 21254448-21255488 29 3.6
02_05_0814 - 31970558-31971126,31971242-31971413 29 3.6
01_01_0594 + 4420381-4421898 29 4.7
11_01_0611 - 4894342-4895448 29 6.3
04_04_0881 + 29055724-29059197 29 6.3
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 28 8.3
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142... 28 8.3
>02_01_0364 +
2615056-2615239,2615573-2615637,2616016-2616103,
2616202-2616269,2616653-2616703,2617168-2617285,
2617463-2617509,2617603-2617629,2617806-2617881,
2618157-2618296,2618623-2618721
Length = 320
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -3
Query: 328 PLCAPSQLARARGLADPAALSAHLQNQEGSSSGRAEVSGSTGGNRFIVCELKGIVLGTSA 149
PL P ++ R++ L + S L G+ GR +S S GN+ ++ +LKG + ++
Sbjct: 141 PLIIPDKIQRSKALIECDGDSIDLSGDVGAV-GRIIISNSPNGNQELLLDLKGTIYKSTI 199
Query: 148 NTSEKCCCSS 119
S C S
Sbjct: 200 VPSRTFCVVS 209
>02_01_0359 +
2578038-2578221,2578555-2578619,2583179-2583266,
2583365-2583432,2583816-2583866,2584331-2584448,
2584626-2584672,2584766-2584792,2584969-2585044,
2585320-2585483
Length = 295
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -3
Query: 328 PLCAPSQLARARGLADPAALSAHLQNQEGSSSGRAEVSGSTGGNRFIVCELKGIVLGTSA 149
PL P ++ R++ L + S L G+ GR +S S GN+ ++ +LKG + ++
Sbjct: 141 PLIIPDKIQRSKALIECDGDSIDLSGDVGAV-GRIIISNSPNGNQELLLDLKGTIYKSTI 199
Query: 148 NTSEKCCCSS 119
S C S
Sbjct: 200 VPSRTFCVVS 209
>04_03_0835 + 20178224-20179483
Length = 419
Score = 32.7 bits (71), Expect = 0.39
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 211 STGGNRFIVCELKGIVLGTSANTSEKCCCSSGEDGATGSNGPLSSLP 71
S+GG + C L+G V+G A C S + A G+ P ++ P
Sbjct: 6 SSGGGGVVRCSLQGAVVGGRAEWQSSCAVLSSKVAALGAASPHAAAP 52
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 43 KVSTASSTALASWIVVHCYLLHHLHQKNNSIFQMYLQRF 159
K+STA+S AS+ ++HCY+ QK + F LQR+
Sbjct: 142 KLSTAASKKAASFPLLHCYVTERNVQKAET-FMAELQRY 179
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = -3
Query: 316 PSQLARARGLADPAALSAHLQNQEGSSSG----RAEVSGSTGGNRFIVCELKGIVLGTSA 149
P + A A G D + + +EG+S G R E + TG N V V G SA
Sbjct: 49 PRRPAAAGGRGDEGSGGVRGRGEEGTSRGGSGARREDAAGTGRNAVAV------VAGGSA 102
Query: 148 NTSEKCCCSSGEDGATGSNGPLSSLPVLLM 59
+ + + EDG +GP L +++
Sbjct: 103 TSGAERVAARAEDGRRSMDGPTLELSEMML 132
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -3
Query: 688 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 548
A P R+ RR D PRPAR H +VTL H S +R
Sbjct: 79 ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125
>02_01_0736 - 5490671-5491813
Length = 380
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3
Query: 367 GCSGEPTCLALPDPLCAPSQLARARGLADPAAL 269
GCS E ALPDP+C P L+ A LA P L
Sbjct: 180 GCSWE----ALPDPICFPCVLSPAGYLAPPLIL 208
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 273 AAGSARPLARAN*LGAHKGSGNARQVGSPLQPVR 374
AAGSAR L + AH GSG R++ + P R
Sbjct: 366 AAGSARELMSGSRRAAHHGSGQRRELMGTITPQR 399
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 566 PPRNTTVLEKKVGRWKQRSGGGWLQKKG*KRKSVKEN*KP*IARW 432
PP+ + E++ G W +RS W +++G KR+ K + + I RW
Sbjct: 115 PPKQSDAGEERRGAWSRRSSEMW-ERRGEKRRGRKGSMR--IQRW 156
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 538 KKSADGNSGAEEGGSKKKDENENQLKRTKS 449
K+S +GN GA GG+ K+D E +R S
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDS 247
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = -3
Query: 271 LSAHLQNQEGS-SSGRAEVSGSTGGNRFIVCELKGIVLG---TSANTSEKCCCSSGEDGA 104
L+ N GS SSG V+ T G + +C + G G + S SSG G
Sbjct: 77 LACAAANALGSDSSGSTTVALKTPGKHYFICTIAGHCAGGMKMEVDVSGSSSSSSGGGGG 136
Query: 103 TGSNGPLSSLP 71
G G S P
Sbjct: 137 GGGGGSTPSSP 147
>01_01_0594 + 4420381-4421898
Length = 505
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +3
Query: 180 SQTINLFPPV--EPETSARPDELPS 248
S+++ L+PPV E + +ARPD LPS
Sbjct: 366 SESLRLYPPVPFEHKAAARPDTLPS 390
>11_01_0611 - 4894342-4895448
Length = 368
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -3
Query: 514 GAEE--GGSKKKDENENQLKRTKSRELRGGIMYYSC 413
G EE G ++++++ +L RT+S ELR G+ + C
Sbjct: 305 GEEETKNGKQEQEDDHVELLRTRSGELREGVEMFDC 340
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 580 CHN-GSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 434
C+N G+ LA LR S+DG EEG +K+ E+ ++K LRG
Sbjct: 867 CYNDGTVLAILRL-PSTSSDGAVVIEEGSFRKEAESLGKVKHRNLTVLRG 915
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 831 HVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDSLP 691
HV S +PY I RLR+SAP + +A W+ + ++P
Sbjct: 555 HVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHTVP 601
>04_04_1548 -
34313212-34313304,34313518-34313632,34314097-34314287,
34314391-34315379,34315989-34316136,34316349-34316424,
34316946-34317110,34317196-34317286,34318069-34318153,
34318256-34318411,34318479-34318586,34318713-34318811,
34318927-34319036,34319139-34319208
Length = 831
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 352 PTCLALPDPLCAPSQLARARGLADPAALSAHLQNQEGSSS 233
PT LP P PS L G +DP A S+ S +
Sbjct: 517 PTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDN 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,401,574
Number of Sequences: 37544
Number of extensions: 538936
Number of successful extensions: 1878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -