Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m10
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 33 0.033
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.077
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 30 0.41
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 29 0.72
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.72
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 1.3
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.3
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.2
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.2
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 2.2
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 3.8
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 26 5.0
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch... 26 5.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 5.0
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 26 5.0
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 6.7
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 6.7
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.7
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.8
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 25 8.8
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 33.5 bits (73), Expect = 0.033
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = -2
Query: 453 SKIRETQNEIDNLHAIDYDVRLKYREIMESLKKDLMYNEKECKRLQEQIEWVSRRRAELK 274
SKI + I++L D LK R + L D+ K+ +LQE+I+W+ R R+ L
Sbjct: 921 SKIEYLEKTIEDLKLALQD-ELKNRNL---LMDDISSYNKQTTKLQEKIKWLERERSILI 976
Query: 273 DEV 265
DE+
Sbjct: 977 DEL 979
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 528 DSLDEHLDVLTRKLADKEGRLRLSKSKIRETQN 430
D L E LDV L +KE + K +I E +N
Sbjct: 295 DELSEELDVAQDLLTEKEDEIATLKRQIEEKEN 327
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.3 bits (70), Expect = 0.077
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -2
Query: 537 EQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMESLK 358
E DSL++++ L L E LR SK + + + IDNL + + ++ SL
Sbjct: 682 EDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLS 741
Query: 357 KDLMYNEKECKRLQEQIEWVSRRRAELK 274
N L + E V R A ++
Sbjct: 742 DAKNTNAILSSELTKSSEDVKRLTANVE 769
Score = 30.7 bits (66), Expect = 0.23
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Frame = -2
Query: 492 KLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMESLKKDLMYNEKECK---- 325
+LA+ E RL L+ +++ + QN++ +L I + R + SL+ + +KECK
Sbjct: 1611 QLAENE-RLSLT-TRMLDLQNQVKDLSNIKDSLSEDLRTL-RSLEDSVASLQKECKIKSN 1667
Query: 324 ---RLQEQIEWVSRRRAELKDEV 265
LQ+ + V R AEL+DEV
Sbjct: 1668 TVESLQDVLTSVQARNAELEDEV 1690
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.41
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 633 RSYKVE-PECQSCQAQVVHRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLS 457
R Y E E Q C + R+CP+ F LE K+ + +++KL++ E L
Sbjct: 78 REYLEELSERQLCLEYIFSRMCPN------FNLETKNLIS-----ISKKLSENE---NLP 123
Query: 456 KSKIRETQNEIDNLHAID 403
SKI E NE+D L I+
Sbjct: 124 VSKIAEVTNELDTLVRIN 141
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = -2
Query: 408 IDYDVRLKYREIMESLKKD--LMYNEKECK--RLQEQIEWVSRRRAELKDEVR 262
I+ D++ K R + +++ L ++E++ K +LQE ++ V+ AEL+DE+R
Sbjct: 454 INLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQDELR 506
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.72
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -2
Query: 540 LEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDY-DVRLKYREIMES 364
L+ K+ L L R+ +LRL ++ + ++ Y ++ Y ++S
Sbjct: 511 LQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKS 570
Query: 363 LKKDLMYNEKECKRLQEQIEWVSRRRAELKDEVRLGQRLY 244
L+ L ++ EC QE+I ++ + ELK ++ + Y
Sbjct: 571 LESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKY 610
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = -2
Query: 543 RLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMES 364
RLE KD ++++ L ++ L L++ + +NE++ A + V Y++ E
Sbjct: 88 RLESKDRRPKYMENLIESAKKRKRDLLLARERALLKKNELEGDDATEKFVTSSYKKHREE 147
Query: 363 LKKDLMYNEKE 331
++K + ++E
Sbjct: 148 VQKAIEDRKEE 158
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/92 (19%), Positives = 41/92 (44%)
Frame = -2
Query: 543 RLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMES 364
++ +D+ DV ++ E + K+ +ET+++++ + + DV+ K + +E
Sbjct: 445 KITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEV 504
Query: 363 LKKDLMYNEKECKRLQEQIEWVSRRRAELKDE 268
K+ + KE EQ + KD+
Sbjct: 505 DDKEEKTDSKETADKVEQTDSKDTNEKPAKDD 536
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 168 EKPHVQRSVTELRHRKEPHLPRPNPAASLVIKTSPPQT--SEAIVTH 34
+K V + ++ + KEP++ P+ AS I P+T SEA V H
Sbjct: 122 KKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESEASVDH 168
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -2
Query: 438 TQNEIDNLHAIDYDVRLKYREIMESLKKDLMYNEKECKRLQEQIEWVSRRRAELKDEV 265
T +E+DN +I+ + +LK+ + + + +KE + L+ ++ + EL+DE+
Sbjct: 831 TSSEVDNKISIE-ETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVEELQDEM 887
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2
Query: 606 QSCQAQVVHRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKL----ADKEGRLRLSKSKIRE 439
Q+C ++ LCP H +V R+E+ D D +D+ T ++ ++K L+ +KS +
Sbjct: 728 QNCSYVLI--LCPVHPIVWKGRIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQS 785
Query: 438 TQNEIDNL 415
++ L
Sbjct: 786 ISGDLVTL 793
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.5 bits (58), Expect = 2.2
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = -2
Query: 531 KDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMES-LKK 355
+D +DE + A+K RLRL++ + E +NE+ + +D + RE++ S LK+
Sbjct: 53 EDEIDEENEDTYETAAEK--RLRLAREYLDEVKNEL--VEDGGFDAKEVDRELLASRLKE 108
Query: 354 DLMYNEKECKRLQEQIEWVSRRRAELKDE 268
D++ K+ Q +++ S+ ++K E
Sbjct: 109 DVLE-----KKGQMYLDYTSKINPDVKIE 132
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 519 DEHLDVLT--RKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMESLKKDLM 346
DEHL+ +KLA+KE + K+ + + NL ++ E ++ ++L
Sbjct: 46 DEHLECSESFKKLAEKEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELA 105
Query: 345 YNEKECKRLQEQI 307
N K + L++ +
Sbjct: 106 QNRKRIQELEKSL 118
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 626 IRSNQNVNRAKLKWCTGSALITTSCRGSGWS 534
+ + + ++ +L WC G++L S + +GW+
Sbjct: 519 LHTAKKIDNKELGWCLGASLSMLSEQNNGWN 549
>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/78 (24%), Positives = 42/78 (53%)
Frame = -2
Query: 540 LEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREIMESL 361
++++D L++ LD+L + D E R +S++ + + + + + RE+++ L
Sbjct: 64 IKERD-LNKKLDMLDECIHDAEFRKLHGESEVDISNKQPQEI--LKAHLYSHKRELLDKL 120
Query: 360 KKDLMYNEKECKRLQEQI 307
+DL+ +KE + L QI
Sbjct: 121 NQDLLDIDKENEGLSTQI 138
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -2
Query: 549 GFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEIDNLHAIDYDVRLKYREI- 373
G R +D++ H DV+ L+ K GR+ L S + + + DV +KY ++
Sbjct: 504 GRREYVQDAVRRHGDVIWDVLSHKNGRIYLCGS----GNSFVSEIEKALMDVAMKYGKLS 559
Query: 372 MESLKKDLMYNEK--ECKRLQE 313
E +K+L +K CK ++E
Sbjct: 560 KEEAQKELKNWQKPMNCKLIKE 581
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 408 IDYDVRLKYREIMESLKKDLMYNEKECKRLQEQIEWVSRRRAELK 274
ID D+ K I +SL DL+ +RL + + W + E+K
Sbjct: 192 IDEDIFEKNLLIKDSLPLDLLIRTSGVERLSDFMLWQCHKNTEIK 236
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 417 LHAIDYDVRLKYREIMESLKKDLMYNEK 334
LH+I D ++ E + LKKD+M N K
Sbjct: 636 LHSILEDEVERFNEYLTRLKKDVMQNNK 663
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 539 WSRRTASMSTWMYSPENLL 483
W + S+ TW Y P+N L
Sbjct: 178 WKEKDKSIKTWNYQPKNAL 196
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 199 ARSRPRLQDNREATRPAL------SHRAASQKGAASTATEP 95
ARS RL D TRP L SHR++ + GA+S T P
Sbjct: 196 ARSLDRLSD---MTRPKLLLNTKRSHRSSEEPGASSPVTSP 233
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/99 (19%), Positives = 44/99 (44%)
Frame = -2
Query: 603 SCQAQVVHRLCPHHNVVQGFRLEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEI 424
+C + +L V+G + EQ+ L +D+L+ +++ K K +I
Sbjct: 163 NCDHEFFEKLTSELQSVEGLQREQRKILFNAIDILSHEISLIASPNSKKKYKSLYCWRKI 222
Query: 423 DNLHAIDYDVRLKYREIMESLKKDLMYNEKECKRLQEQI 307
++ +D D+ + +E +S ++ E+ K +Q+
Sbjct: 223 FEIY-MDSDIFISCKEADQSHERTPELAERHLKWFDDQV 260
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 8.8
Identities = 28/135 (20%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Frame = -2
Query: 462 LSKSKIRETQ---NE--IDNLHAIDYDVRL-KYREIMESLKKDL--MYNEKECKRLQEQI 307
LSK K+++ NE + + + ++++ K +E ES+++ L + ++ E +E+
Sbjct: 52 LSKDKVKKNYGFLNEYRVSEIQQLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERA 111
Query: 306 EWVSRR-RAELKDEVRLGQRLYGXXXXXXXXXXXXLQRGRGQDYKITEKPHVQRSVTELR 130
E V RA+ K+ V+ G++ + + + K +K ++++
Sbjct: 112 ERVMHEFRAQEKERVKEGKKPFYLKRNEQKKLIQMDKYKSMEGTKALDK-YIEKKRRRRA 170
Query: 129 HRKEPHLPRPNPAAS 85
+++ HLPR P+A+
Sbjct: 171 QKEKKHLPRARPSAN 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,009
Number of Sequences: 5004
Number of extensions: 55456
Number of successful extensions: 221
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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