Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m10
         (757 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    27   0.47 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.62 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.8  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 217 TGQFRGRFPVQSLTESHLIFQLGPPPGHP 303
           TGQF   + +Q L    LI + G PPGHP
Sbjct: 503 TGQFPSMWKIQKLV---LIPKPGKPPGHP 528


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -2

Query: 543 RLEQKDSLDEHLDVLTRK-LADKEGR-LRLSKSKIRET--QNEIDNLHAIDYDVRLKYRE 376
           R E++ S + +L    RK L  K+GR  + S  + R+   Q E+ +L+    D      +
Sbjct: 356 RKEEECSRELNLKEQKRKELYAKQGRGSQFSSKEERDKWIQGELKSLNKQIKDKISHQNK 415

Query: 375 IMESLKKDLMYNEKECKRLQEQIEWVSRRRAELKD 271
           + + LKKD+    +  K++QE  E   + R ++ +
Sbjct: 416 LQDDLKKDIAKQGELEKKIQEHTESFEQLRVQIDE 450


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 507  DVLTRKLADKEGRLRLSKSKIRETQNEI 424
            +VL RKL D+E + R S+ +    Q++I
Sbjct: 1284 EVLDRKLRDQEEKRRQSEKQDTSAQSDI 1311


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,514
Number of Sequences: 2352
Number of extensions: 15978
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)