Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m08
         (869 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   4.0  
Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium...    24   5.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   5.2  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 423 GNHYHHHHISEIL 385
           G H+HHHH S ++
Sbjct: 431 GRHHHHHHHSALV 443


>Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium
           channel protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 342 GRDLYGALY*DYVPPFTPVLAAQWIATLMLNSKVVFFFYCLDEWTSS 202
           G  L+G  Y D V  F      +W  T  ++S ++ F     EW  S
Sbjct: 33  GMQLFGKNYVDNVDRFPDHDLPRWNFTDFMHSFMIVFRVLCGEWIES 79


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 342  GRDLYGALY*DYVPPFTPVLAAQWIATLMLNSKVVFFFYCLDEWTSS 202
            G  L+G  Y D V  F      +W  T  ++S ++ F     EW  S
Sbjct: 948  GMQLFGKNYVDNVDRFPDHDLPRWNFTDFMHSFMIVFRVLCGEWIES 994


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,977
Number of Sequences: 2352
Number of extensions: 17449
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93026475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)