Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m08
         (869 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113395-1|AAI13396.1|  467|Homo sapiens Zic family member 3 het...    25   7.0  
BC113393-1|AAI13394.1|  467|Homo sapiens Zic family member 3 het...    25   7.0  
AL035443-1|CAB41648.1|  467|Homo sapiens Zic family member 3 het...    25   7.0  
AF028706-1|AAC05594.1|  467|Homo sapiens zinc-finger protein of ...    25   7.0  
AL035443-2|CAI42303.1|  457|Homo sapiens Zic family member 3 het...    25   7.0  

>BC113395-1|AAI13396.1|  467|Homo sapiens Zic family member 3
           heterotaxy 1 (odd-paired homolog, Drosophila) protein.
          Length = 467

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 426 IGNHYHHHH 400
           +G+H+HHHH
Sbjct: 85  LGHHHHHHH 93



 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 420 NHYHHHHISEI 388
           +H+HHHH S++
Sbjct: 91  HHHHHHHTSQV 101


>BC113393-1|AAI13394.1|  467|Homo sapiens Zic family member 3
           heterotaxy 1 (odd-paired homolog, Drosophila) protein.
          Length = 467

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 426 IGNHYHHHH 400
           +G+H+HHHH
Sbjct: 85  LGHHHHHHH 93



 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 420 NHYHHHHISEI 388
           +H+HHHH S++
Sbjct: 91  HHHHHHHTSQV 101


>AL035443-1|CAB41648.1|  467|Homo sapiens Zic family member 3
           heterotaxy 1 (odd-paired homolog, Drosophila) protein.
          Length = 467

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 426 IGNHYHHHH 400
           +G+H+HHHH
Sbjct: 85  LGHHHHHHH 93



 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 420 NHYHHHHISEI 388
           +H+HHHH S++
Sbjct: 91  HHHHHHHTSQV 101


>AF028706-1|AAC05594.1|  467|Homo sapiens zinc-finger protein of the
           cerebellum 3 protein.
          Length = 467

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 426 IGNHYHHHH 400
           +G+H+HHHH
Sbjct: 85  LGHHHHHHH 93



 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 420 NHYHHHHISEI 388
           +H+HHHH S++
Sbjct: 91  HHHHHHHTSQV 101


>AL035443-2|CAI42303.1|  457|Homo sapiens Zic family member 3
           heterotaxy 1 (odd-paired homolog, Drosophila) protein.
          Length = 457

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 426 IGNHYHHHH 400
           +G+H+HHHH
Sbjct: 85  LGHHHHHHH 93



 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 420 NHYHHHHISEI 388
           +H+HHHH S++
Sbjct: 91  HHHHHHHTSQV 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,839,965
Number of Sequences: 237096
Number of extensions: 2459849
Number of successful extensions: 4388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4091
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)