Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m08
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     29   3.3  
U97009-7|AAM45361.1|  133|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -3

Query: 585 SSQCMAVYLDQISFDKLRLAETSARPIQSI*NILENNETHMLAIFVKGKTMLEIGN 418
           S  C+AVY   + F  L +A+ S+RP   + + LE N T++L   +K +  LE+ N
Sbjct: 7   SFSCVAVYGSLVIFTYLFVAKPSSRPPTDLLDDLEINCTNILQ-GLKNEKQLELIN 61


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -3

Query: 585 SSQCMAVYLDQISFDKLRLAETSARPIQSI*NILENNETHMLAIFVKGKTMLEIGN 418
           S  C+AVY   + F  L +A+ S+RP   + + LE N T++L   +K +  LE+ N
Sbjct: 7   SFSCVAVYGSLVIFTYLFVAKPSSRPPTDLLDDLEINCTNILQ-GLKNEKQLELIN 61


>U97009-7|AAM45361.1|  133|Caenorhabditis elegans Hypothetical
           protein T19H12.3 protein.
          Length = 133

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 161 IYNVNAPPTLRYKF*GLNFIGLAHGTTPRRSLF 63
           + NVN P TL YK     FIGL      RR+ F
Sbjct: 19  LVNVNVPSTLYYKVNDTAFIGLPVSANYRRTYF 51


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 729 CFVVTYYLILCMTN*VS*ILLQKCFFCL*NKIYLI-TFASSDLL 857
           CFV  +Y I  +   VS ++   C  CL N++YL+  F + D L
Sbjct: 231 CFVSLFYSIAFLVVAVSQLIFVFCEVCLKNRLYLLFQFFAFDFL 274


>U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical
           protein AH9.6 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 238 DDFGIQHQRRYPLRGEDRSE----W-RNIVLIKCSVKVTTLSTEKYDARRR 375
           DD G   +  Y L GE R      W RN+ L+  ++ +T L  E Y  RR+
Sbjct: 194 DDVGYALKDYYELNGEQRDHSVPMWARNLFLVCLALVITALLVEWYVVRRK 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,474
Number of Sequences: 27780
Number of extensions: 412052
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)