Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m07
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 38 0.001
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 29 1.2
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 2.7
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 27 4.7
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 6.3
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 26 6.3
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 8.3
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 8.3
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 26 8.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 8.3
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 38.3 bits (85), Expect = 0.001
Identities = 49/251 (19%), Positives = 100/251 (39%), Gaps = 4/251 (1%)
Frame = -3
Query: 750 YGAQNQNDWGMSGGNAFDNGAPPLEYDPKTRNDXXXXXXXXXXIMLMCTASFTVLVFITP 571
Y N++ + F N P E R L T+ F + ++ P
Sbjct: 25 YSEYNESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHP 84
Query: 570 DMKVFFQRIGLVIGIPAMI-LIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSFIT 394
+ Q + + I L++ +M R + L + + T ++F
Sbjct: 85 AFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITF-- 142
Query: 393 VHYNTEILMYAMLAT-AVVVFVCILLACSNFDFTKW--FIYVIVISTAFSVIVMIIGVTT 223
++ I++ A+ T V V + S +DF++ F+YV + S + ++ +T
Sbjct: 143 --FSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFFFVPST 200
Query: 222 LITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVDI 43
+D+ GTL+ ++ + IL S E ++ M + +LY+ +++
Sbjct: 201 PF-------IDMAFAGFGTLVFCGYILFDTYNILHRYSPE----EFIMSSLMLYLDFINL 249
Query: 42 FLQFVQILGIL 10
F++ +QILG+L
Sbjct: 250 FIRILQILGML 260
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 28.7 bits (61), Expect = 1.2
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = -3
Query: 555 FQRIGLVIGIPAMILII-GLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSFITVHYNT 379
F IGLV I ++LI+ G+S S + R NI+C ++ + G + +FI Y+T
Sbjct: 288 FDFIGLVCVITGIVLILLGISLGASSGKWRR---ANILCYLI-IGGCLFVFAFI---YDT 340
Query: 378 EILMYAMLATAVVV--FVCILLACSNFDFTKWFIYVIVISTAFSVI 247
A+L LLACS+F + + ++ + F I
Sbjct: 341 FTKRNAVLPPPFFKNRSSAALLACSSFFYLNYMLFAYYVPQYFQRI 386
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -3
Query: 357 LATAVVVFVCILLACSNFDFTKW---FIYVIVISTAFSVIVMIIGVTTLITNTHMKSLD- 190
+ATA++V LL C F K+ F ++ ++ ++++++G++ ++ + +
Sbjct: 262 IATALIVVFLHLLPCERTSFKKFLKTFDFIGLVCVITGIVLILLGISLGASSGKWRRANI 321
Query: 189 LGLLIVGTLINVVILVLELQT 127
L LI+G + V + + T
Sbjct: 322 LCYLIIGGCLFVFAFIYDTFT 342
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.5 bits (58), Expect = 2.7
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Frame = -3
Query: 597 FTVLVFITPDM--KVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVI 424
++ L+ P+M FF + + I +PA+ + +GL FV + E N + + I
Sbjct: 416 WSALLATVPEMCALTFFGILHVPINVPALAISLGLDFVDTDKELIAHGVSNTLSGAVGSI 475
Query: 423 ----GMSTIVSFITVHYNTEI--LMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVIST 262
+ + FI N + +M A+ A++V ++A IY++ I
Sbjct: 476 QNYMTYTNSLMFIRSGGNNRLAGIMLALATVALLVIGPGIIAYIPVWTVGCLIYLLGIEL 535
Query: 261 AFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVL 139
+ IG+TT I + ++ + +V ++ +VI ++
Sbjct: 536 LKESLWDPIGITTKIEYFTICAIVFTMTVVDFVVGIVIGII 576
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -3
Query: 885 HSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERKNPSIV 763
H++ED AN + + +++ L ++V+G +NP ++
Sbjct: 76 HTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLI 116
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -3
Query: 261 AFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVLEL 133
A + I++I+G +T H+ + +G ++G + + L++ L
Sbjct: 161 AIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPL 203
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 616 VNVHSIIHRSGV-YHARYESVFSKDRLSNWHTSH-DFNYWAEFRDV 485
VN H V YH +SV+ + + W+ SH ++ W DV
Sbjct: 87 VNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDV 132
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 618 MLMCTASFTVLVFITPDMKVFFQRIGL 538
+L+ T FTVL+F P + VF+ L
Sbjct: 485 LLLGTILFTVLIFFLPTIYVFYAAFAL 511
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 117 GRSVELHEDDYAMGAFLLYISIVDIFLQFV 28
G V + ++ Y + LLYISI+ +FL +V
Sbjct: 17 GECVRVAKEKYKIIHRLLYISIIFLFLNYV 46
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 757 PVLWSSKSERLGDVRR 710
P++WS+++ R GDVRR
Sbjct: 116 PLIWSNRNLREGDVRR 131
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 682 RRCAIIKSVAS*HPPVVLILSSIELVHHNTRIFSFI 789
R AI+K + + HP +V L ++ HH + ++
Sbjct: 545 REVAILKGLGNNHPHIVKYLDFVKTKHHFGIVLDYV 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,009,628
Number of Sequences: 5004
Number of extensions: 92424
Number of successful extensions: 250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -