Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m07
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1105 + 30438140-30438350,30438448-30438926 42 7e-04
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 35 0.076
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 34 0.17
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 33 0.23
05_04_0372 + 20726103-20726139,20726266-20726302,20726953-207270... 33 0.23
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 31 0.93
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 31 1.6
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 3.8
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 29 5.0
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 29 5.0
12_01_0541 + 4251931-4254141 29 6.6
06_03_1324 + 29322459-29322515,29322720-29322819,29323049-293232... 28 8.7
06_02_0079 - 11512747-11512770,11513281-11513321,11513409-115135... 28 8.7
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 41.9 bits (94), Expect = 7e-04
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 5/204 (2%)
Frame = -3
Query: 618 MLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCS--ECARKMPCNIV 445
ML+ A +V+VF+ P + +FF + G I +I L F++ C ++ P N++
Sbjct: 31 MLLTIAVASVVVFVRP-VALFF--VSTPAGFALYIFLIILPFIVLCPLYYYYQRHPVNLL 87
Query: 444 CLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVIS 265
L L +S V E+++ + + TA VV + L F + +
Sbjct: 88 LLALFTAAISFAVGLTCAFTKGEVILESAILTAAVV---VSLTAYTFWAARRGHDFSFLG 144
Query: 264 TAFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVI---LVLELQTILGGRSVELHE 94
VMI+ V LI + L+I G L +V +V + ++ S
Sbjct: 145 PFLFAAVMILMVFALI-QVFFPLGRVSLMIYGGLAALVFCGYIVYDTDNLIKRYSY---- 199
Query: 93 DDYAMGAFLLYISIVDIFLQFVQI 22
D+Y A LY+ ++++FL + +
Sbjct: 200 DEYVWAAVALYLDVINLFLSLLTL 223
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 35.1 bits (77), Expect = 0.076
Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 4/203 (1%)
Frame = -3
Query: 615 LMCTASFTVLVFITPDMKVFFQ-RIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCL 439
L+ T + V + +K FFQ R V+ +I+I L ++ K P N+ L
Sbjct: 48 LLVTVAVAGAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFL 107
Query: 438 VLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTA 259
+L + +S V + N ++ A TA +V I L C F K +
Sbjct: 108 LLFTVCISFSVGLGCLSKNGTVIFQAAGMTAAIV---IGLTCYTFWAAKRGYDFEFLGPF 164
Query: 258 FSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVI---LVLELQTILGGRSVELHEDD 88
+++ + +IT + G L+ G + ++ ++ + ++ + D+
Sbjct: 165 LFAATLVLFLYAIIT-IFLPMGRTGKLVYGCVAALIFSGFIIYDTDNLIKRYTY----DE 219
Query: 87 YAMGAFLLYISIVDIFLQFVQIL 19
Y A LY+ I+++F+ V L
Sbjct: 220 YVAAAITLYLDIINLFMALVTAL 242
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 33.9 bits (74), Expect = 0.17
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 3/202 (1%)
Frame = -3
Query: 615 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 436
L TA+ V + FF + +L + L + +K P N++ L
Sbjct: 43 LAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLG 102
Query: 435 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAF 256
L + +S V + + +++ A TAVVV L A + + + + + F
Sbjct: 103 LFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVIS--LTAYTFWAAKRGHDFNFLGPFLF 160
Query: 255 SVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVI---LVLELQTILGGRSVELHEDDY 85
S ++++I + +LI + +I G L ++V ++ + I+ + D+Y
Sbjct: 161 SAVMVLI-LFSLI-QIFFPLGKISEMIYGGLASLVFSGYIIYDTDNIIKRYTY----DEY 214
Query: 84 AMGAFLLYISIVDIFLQFVQIL 19
A LY+ ++++FL +++L
Sbjct: 215 VWAAVSLYLDVINLFLALLRVL 236
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 33.5 bits (73), Expect = 0.23
Identities = 39/201 (19%), Positives = 84/201 (41%), Gaps = 3/201 (1%)
Frame = -3
Query: 615 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCS--ECARKMPCNIVC 442
L+ TA+ +V + FF + G+ I +I L F++ C +K P N++
Sbjct: 47 LLLTAAVAAVVVKVRAISHFF--VSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLIL 104
Query: 441 LVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVIST 262
L L + +S V + ++++ + + T VVVF + F ++
Sbjct: 105 LGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLF 164
Query: 261 AFSVIVMIIG-VTTLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDY 85
A +++++ + L + + G + +LI +V + I+ + D Y
Sbjct: 165 ASLIVLLVFAFIQILFPLGRISQMIYG--GIASLIFSGYIVYDTDNIIKRYTY----DQY 218
Query: 84 AMGAFLLYISIVDIFLQFVQI 22
A LY+ ++++FL + +
Sbjct: 219 VWAAVSLYLDVINLFLSLMTL 239
>05_04_0372 +
20726103-20726139,20726266-20726302,20726953-20727048,
20728343-20728625,20728862-20728981,20729072-20729284
Length = 261
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/120 (20%), Positives = 50/120 (41%)
Frame = -3
Query: 606 TASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAV 427
TA V + K + +GL + ++ + L +++ RK+ C + V ++
Sbjct: 82 TAYVVVFLVFASTHKTRLRTLGLAAAVASVFAAVALVSLLALHGQHRKLLCGVAATVCSI 141
Query: 426 IGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVI 247
++ +S + + T+ + Y ++ VF+C T WFIY ++ F I
Sbjct: 142 CMYASPLSIMRLVIKTKSVEYMPFLMSLAVFLC---------GTSWFIYGLLGRDPFVTI 192
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 31.5 bits (68), Expect = 0.93
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 618 MLMCTASFTVL-VFITPDMKVFFQRIGL--VIGIPAMILIIGLSFVMSCSECARKMPCNI 448
M +CT +F ++ + +T V IGL V GI A++ I+ FV+ + MP +
Sbjct: 636 MSICTLTFWIVSIIVTYAFPVMLSSIGLIGVCGIYAVVCIVSFIFVLIKVPETKGMPLAV 695
Query: 447 VCLVLAV 427
+ LAV
Sbjct: 696 IANSLAV 702
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -3
Query: 513 LIIGLSFVMSCSECARKMPCNI---VCLVLAVIGMSTIVSFITVHYN-TEILMYAMLATA 346
+++ +SF C +PC + + + +G ST + V + T+I ++ A
Sbjct: 91 ILVAISFSSVFGSC---LPCKLTGTISSTMETVGYSTFAAIFNVGWAVTQIANLSLYGIA 147
Query: 345 VVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMKS 196
+++F + + S +W YV + + V+V +IG N H ++
Sbjct: 148 LLIF-SLRQSVSVIVQYRWIAYVSIALGSCFVVVFLIGTEEPGLNQHCQN 196
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/90 (23%), Positives = 42/90 (46%)
Frame = +1
Query: 514 NHGWYANY*ADPLKKHFHIGRDKHQNGE*CCAH*HYKNYNEHKTNEIIPSLRIIFQRRCA 693
+ G A+ A PL+K+ + D C AH + + +T+ +++ Q
Sbjct: 198 SRGSEASSNAPPLRKNASMSSDISDVSSQCSAH----SVSARRTSSWCFDEKVLIQSLYK 253
Query: 694 IIKSVAS*HPPVVLILSSIELVHHNTRIFS 783
++ SVA +P ++ I +L+H + R +S
Sbjct: 254 VMVSVAENNPVILYIRDVDQLLHRSQRTYS 283
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 29.1 bits (62), Expect = 5.0
Identities = 40/206 (19%), Positives = 89/206 (43%), Gaps = 7/206 (3%)
Frame = -3
Query: 615 LMCTASFTVLVFITPDMKVFFQR---IGLVIGIPAMILIIGLSFVMSCSECARKMPCNIV 445
L+ T + + L + P + + LV+ + +L++ L K P N V
Sbjct: 67 LLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPFVLMVPLYHYQ------HKHPHNFV 120
Query: 444 CLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVIS 265
L L + +S + + +I++ A++ T+ VV L A + + K + +
Sbjct: 121 YLGLFTLCLSFSIGVACANTQGKIVLEALILTSAVV--ASLTAYTFWASKKGKEFGYLGP 178
Query: 264 TAFSVIVMIIGVTTLITNTHMKSLDLGLLIV----GTLINVVILVLELQTILGGRSVELH 97
FS +V+++ V + I + L G + + G L+ ++ + + ++ +
Sbjct: 179 ILFSALVLLV-VISFIQASVFFPLGSGPVALFGGLGALVFSGFIIYDTENLIKRHTY--- 234
Query: 96 EDDYAMGAFLLYISIVDIFLQFVQIL 19
DDY + LY+ I+++FL + ++
Sbjct: 235 -DDYIWASVELYLDILNLFLYILNMI 259
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 649 RSFCVHYSFYNVNVHSIIHRSGVYHARYE--SVFSKDRLSNWHTSHDFNYWA 500
RS HY YN V H YH+ Y+ S ++ ++ +HDF +A
Sbjct: 117 RSKIYHYKIYNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFA 168
>12_01_0541 + 4251931-4254141
Length = 736
Score = 28.7 bits (61), Expect = 6.6
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = -3
Query: 429 VIGMSTIVSFITVHYNTEILMYAMLAT-AVVVFVCILLACSN-FDFTKWFIYVIVISTAF 256
V+ ++ ++S+ V Y ++ VVV+ C LL C++ T
Sbjct: 62 VVWLALMLSYPAVSYTIGLMQSGSFRNDMVVVWACFLLGCADGIAACSLDGADQQARTMI 121
Query: 255 SVIVMIIGVTTLITNTHMKSLDLGLLIVGT---LINVVILVLELQTIL-GGRSVELHEDD 88
S + V L+ +++ SL L L ++ + L+NV LVL L+ +L GR L D+
Sbjct: 122 SQATQVFYVMLLLI-SYLGSLQLQLKVLLSLLWLLNVAKLVLRLRGLLAAGRDRVLTADN 180
Query: 87 YAMGAFLLYISIVDIF 40
+ + ++ + + I+
Sbjct: 181 WLISKYMAHEKVSSIW 196
>06_03_1324 +
29322459-29322515,29322720-29322819,29323049-29323266,
29323767-29324305,29324396-29325125
Length = 547
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 540 LVIGIPAMILIIGLSFVMSCSECAR 466
L +GIPAM+L +GLS +++ S R
Sbjct: 224 LGLGIPAMVLAVGLSCLVAASRAYR 248
>06_02_0079 -
11512747-11512770,11513281-11513321,11513409-11513505,
11513555-11513965,11514493-11514665,11514829-11516008
Length = 641
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 450 IVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV-FVCILLACSNFDFTKW 289
IV L + + G+S + F+ E L ++A ++VV CI L C+ F KW
Sbjct: 461 IVILAVLISGLSLLFPFLP-WLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKW 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,438,374
Number of Sequences: 37544
Number of extensions: 571955
Number of successful extensions: 1374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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