Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m07
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 87 2e-17
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 71 1e-12
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 51 1e-06
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 35 0.068
U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine rece... 31 0.84
U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF067944-5|AAC17673.1| 335|Caenorhabditis elegans Seven tm rece... 29 3.4
Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeri... 29 4.5
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 29 4.5
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical pr... 29 5.9
M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alp... 29 5.9
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 29 5.9
AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical... 29 5.9
U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 87.0 bits (206), Expect = 2e-17
Identities = 56/249 (22%), Positives = 118/249 (47%), Gaps = 4/249 (1%)
Frame = -3
Query: 750 YGAQ-NQNDWGMSGGNAFDNGAPPLEYDPKTRNDXXXXXXXXXXIMLMC-TASFTVLVFI 577
+GA NQ + G GG +G ++ KT +++C A+ TV+ ++
Sbjct: 48 HGAMFNQMENGQHGGGDNPDGKYSFQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWV 107
Query: 576 TPD-MKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSF 400
D M++ + L +G + + LS V C RK P N++ + + S +
Sbjct: 108 HDDTMRMVRRNSALYLGSYVIFFVTYLSLVC-CEGVRRKFPVNLIVTGIFTLATSVMTMV 166
Query: 399 ITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFTKWFIYVIVISTAFSVIVMIIGVTT 223
I+ H++ +++ A+ F +++A + FD T Y+++IS F +++ + +
Sbjct: 167 ISAHHDANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYILIISMCFMFFGLVVVICS 226
Query: 222 LITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVDI 43
+ +K L + + G LI ++ L L++Q ++GG+ E+ ++Y + ++I IV +
Sbjct: 227 MFFK--IKFLMMVYALGGALIMMLYLFLDVQMLMGGKKYEISPEEYIFASVQIFIDIVQM 284
Query: 42 FLQFVQILG 16
F + + G
Sbjct: 285 FWFLLSLFG 293
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 87.0 bits (206), Expect = 2e-17
Identities = 56/249 (22%), Positives = 118/249 (47%), Gaps = 4/249 (1%)
Frame = -3
Query: 750 YGAQ-NQNDWGMSGGNAFDNGAPPLEYDPKTRNDXXXXXXXXXXIMLMC-TASFTVLVFI 577
+GA NQ + G GG +G ++ KT +++C A+ TV+ ++
Sbjct: 48 HGAMFNQMENGQHGGGDNPDGKYSFQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWV 107
Query: 576 TPD-MKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSF 400
D M++ + L +G + + LS V C RK P N++ + + S +
Sbjct: 108 HDDTMRMVRRNSALYLGSYVIFFVTYLSLVC-CEGVRRKFPVNLIVTGIFTLATSVMTMV 166
Query: 399 ITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFTKWFIYVIVISTAFSVIVMIIGVTT 223
I+ H++ +++ A+ F +++A + FD T Y+++IS F +++ + +
Sbjct: 167 ISAHHDANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYILIISMCFMFFGLVVVICS 226
Query: 222 LITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVDI 43
+ +K L + + G LI ++ L L++Q ++GG+ E+ ++Y + ++I IV +
Sbjct: 227 MFFK--IKFLMMVYALGGALIMMLYLFLDVQMLMGGKKYEISPEEYIFASVQIFIDIVQM 284
Query: 42 FLQFVQILG 16
F + + G
Sbjct: 285 FWFLLSLFG 293
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 2/203 (0%)
Frame = -3
Query: 618 MLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCL 439
M TA+F V+ ++ + + + V I ++ ++ + C R+ P NI+ L
Sbjct: 42 MFAITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILL 101
Query: 438 VLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLAC-SNFDFT-KWFIYVIVIS 265
+ + + + F+T YN + ++ + T V I+ + + D T K I ++
Sbjct: 102 TIFTLSAAVMTMFVTACYNVQSVLICLCITTVCSGSVIIFSMKTKSDLTSKMGIAFMLSM 161
Query: 264 TAFSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDY 85
FS + + T + S+ GL L+ + L +++Q ++GGR EL +DY
Sbjct: 162 VLFSFGIFALIFTLAFNWQFLYSVYSGL---AALLMMFYLAIDVQLLMGGRKYELSPEDY 218
Query: 84 AMGAFLLYISIVDIFLQFVQILG 16
A +++ I++IFL + I G
Sbjct: 219 IFAAMEIFLDILNIFLMLLNIFG 241
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Frame = -3
Query: 402 FITVHYNTE-ILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVT 226
FIT Y+ + +L+ ++ T + + A + D T ++ + ++ +
Sbjct: 4 FITATYSADAVLISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIF 63
Query: 225 TLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAMGAFLLYISIVD 46
+ N L + ++G L+ + L +++Q I+GGR VE+ ++Y A +++ I+
Sbjct: 64 CIFLNWQF--LYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILG 121
Query: 45 IFLQFVQILGILGD 4
+FL ILG++G+
Sbjct: 122 MFLN---ILGVVGN 132
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 35.1 bits (77), Expect = 0.068
Identities = 37/200 (18%), Positives = 89/200 (44%), Gaps = 1/200 (0%)
Frame = -3
Query: 615 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 436
L+ T ++ P+ Q+ ++ P ++ I L +++ AR++P N V L
Sbjct: 85 LLFTIGICAAIYNIPNSNQLLQKHAWIV-FPNLLGSIAL--IIALHVYAREVPLNYVLLA 141
Query: 435 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNF-DFTKWFIYVIVISTA 259
+ + + + ++++ A + T +VV N DF+ + + +
Sbjct: 142 AFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTLQNKRDFSVGYASM----GS 197
Query: 258 FSVIVMIIGVTTLITNTHMKSLDLGLLIVGTLINVVILVLELQTILGGRSVELHEDDYAM 79
+++ G+ + + +++ + + G + V+LV++L I+ S E DY
Sbjct: 198 LLCVLLWAGIFQMFFMS--PAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPE----DYIC 251
Query: 78 GAFLLYISIVDIFLQFVQIL 19
LY+ I+++F++ +QI+
Sbjct: 252 ACVSLYMDILNLFIRILQIV 271
>U55366-7|AAA97985.2| 323|Caenorhabditis elegans Serpentine
receptor, class x protein74 protein.
Length = 323
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -3
Query: 540 LVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMST-IVSFITVHYNTEILMY 364
L++ IP IL L + S A K N++CLV AV + +V+F+ + T +L Y
Sbjct: 13 LIVAIPG-ILFSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71
Query: 363 AMLATAV 343
+++ +
Sbjct: 72 NYMSSTL 78
>U39674-2|AAY86211.1| 94|Caenorhabditis elegans Hypothetical
protein C06E2.9 protein.
Length = 94
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 364 IHQDLRVVMHRDERNNCGHSYNR*NKTHNVARHFSGTLRTRHHE 495
+H+ R V H+ N GH ++R +K NV+RHF +HH+
Sbjct: 43 MHRFRRHVEHQKHSLNDGHLHSRNSK--NVSRHFVNDGHAQHHK 84
>AF067944-5|AAC17673.1| 335|Caenorhabditis elegans Seven tm
receptor protein 67 protein.
Length = 335
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = -3
Query: 366 YAMLATA-VVVFVCILLACSNFD-FTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMKSL 193
YA +T V++++ + A F + K IY+ V+ST+FS + MI+ T N + S
Sbjct: 16 YASFSTNFVLIWITVFHAKKLFGAYKKMIIYISVLSTSFSGLEMIMKPFTHNYNGALLSF 75
Query: 192 DLGLLIVGTLINVVILVLELQTIL 121
+L L + I + +++ Q L
Sbjct: 76 NLCELNIPLKIRQIFILIWSQFYL 99
>Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical
protein C26C6.2 protein.
Length = 354
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -2
Query: 643 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 470
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 469 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 305
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 354
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -2
Query: 643 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 470
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 469 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 305
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 546 IGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSFITVHYN----- 382
+ L+ + +++II S S M + + + I + + S++ YN
Sbjct: 18 LSLLFNLVLLVIIIKFSRPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLYT 77
Query: 381 TEILMYAMLATAVVVFVCILLACSNFDFTKWFIY 280
T+ + Y +L+ ++V C + AC + FIY
Sbjct: 78 TQFVEYQLLSQILIVTFCSIFACMQVVLSTQFIY 111
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 151 NNIYQCADNQKAEVQRLH 204
NNIY+CA+NQK + + H
Sbjct: 474 NNIYKCANNQKTQFEDRH 491
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 378 EILMYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMK 199
+ L+ A LA ++ + + I F KW++ + S V+V+++ LI HM
Sbjct: 328 QFLLVAALAASIALAIIIFET-----FEKWYLKISTSSLGILVMVLLLSNLALINKDHMF 382
Query: 198 S 196
S
Sbjct: 383 S 383
>Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical
protein C39E9.6 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 152 LYWYWSFRPF*VVDLWNSTRTITRWVHSYSTF 57
LYW WS PF +D + T+ W H + F
Sbjct: 90 LYWEWSGDPFSDLDKFGKIATVA-WDHEFEQF 120
>M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alpha
subunit protein.
Length = 354
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Frame = -2
Query: 643 FCVHYSFYNVNVHSIIHRSGVYHARYESVFSKDRLSN--WHTSHDFNYWAEFRDVLFGVC 470
FCV S Y+ ++H + +ES+ D + N W T + +D+
Sbjct: 224 FCVAMSEYD----QLLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 279
Query: 469 QKNALQHCVSCFSGYRNVHNCFVHHGALQHGDLDVCNAGDRCRCVCLYITGLFQF 305
+K+ L C +SG ++ H + A N C C T QF
Sbjct: 280 KKSPLTICFPEYSGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQF 334
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 151 NNIYQCADNQKAEVQRLH 204
NNIY+CA+NQK + + H
Sbjct: 474 NNIYKCANNQKTQFEDRH 491
>AL031627-13|CAA20964.1| 304|Caenorhabditis elegans Hypothetical
protein Y102A5C.23 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -3
Query: 369 MYAMLATAVVVFVCILLACSNFDFTKWFIYVIVISTAFSVIVMIIGVTTLITNTHMKSLD 190
M + ++ V VC++ + T FIY IV S + +I+ ++ L N ++
Sbjct: 211 MVVLTFKSIQVLVCLMTNHNGISLTSLFIYAIVFSDIITT-PLIVQMSYLSCNKRNMNVL 269
Query: 189 LGLLIVGTLINVV 151
L + L NV+
Sbjct: 270 LSTISARKLFNVL 282
>U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical
protein ZK563.2 protein.
Length = 573
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 303 DFTKWFIYVIVISTAFSVI-VMIIGVTTLITNTHMKSLDLGLLIVGTLINVVIL 145
D +WFI V+ IST F +I IIG+T L N + + L+I T + +L
Sbjct: 439 DHYRWFI-VVFISTVFLIIPFTIIGLTLLPDNVIVIVFIIILIIAITCCFICVL 491
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = -3
Query: 450 IVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLAC---SNFDFTKWFIY 280
++ +V ++ I++ I T I ++ ++V C+L C S DF W +
Sbjct: 154 MISVVYLLLASKNIMNMIIAFSGTHISFCILI---LIVATCLLPLCFLKSPQDFW-WAVV 209
Query: 279 VIVISTAFSVIVMIIG 232
+ +++T+ +VI++I+G
Sbjct: 210 IAMMTTSAAVILIIVG 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,336,334
Number of Sequences: 27780
Number of extensions: 534194
Number of successful extensions: 1590
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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