Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m06
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    70   4e-13
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   4.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   8.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.1  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    26   8.1  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
 Frame = -3

Query: 796 YPDFGKLLNATGRSILYS-CSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWA---- 632
           Y      LN TGR I YS C W      +  + N+ +     N WR   DI D+++    
Sbjct: 172 YKRMSDALNKTGRPIFYSLCQWG-----EDFVWNWGNTI--ANSWRISGDIFDTFSRKDV 224

Query: 631 ----SLTKIMAWFGDN---------QDRLAQHAGPGH-WNDPDMLLIGNFGLSVDQAKVQ 494
                  +  A  GD+            L+  AG    WND D L +GN G+S ++ K  
Sbjct: 225 RCPCETIECFALQGDHCSVMNIISKASFLSSKAGMNSGWNDLDSLEVGNGGMSFEEYKTH 284

Query: 493 MAVWAILAAPLLISTDLATIRPEFKQILLNRDIIAVNQDKLGKQGLRVWKK 341
             +WAIL +PL++  D++++ P  K I+ N+++I++NQD        +WKK
Sbjct: 285 FTMWAILKSPLILGNDVSSMSPMDKLIVSNKELISINQDIGTNPAALIWKK 335



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 872 TFVEWEIDYLKLDGCY 825
           TF +W +DYLK D C+
Sbjct: 142 TFADWGVDYLKYDNCF 157


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 388 VNQDKLGKQGLRVWKKMGSGSRSKLEIWKRELYDG 284
           V ++K GK+G     K+    R+  E+ KR++ DG
Sbjct: 738 VGKNKFGKRGFNPLNKVSLPKRNTRELKKRKVSDG 772


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 706 LPNYASIAEHCNLWRNYDDIEDSWASLTK 620
           LP    I EHC L  N  +I + +A+L K
Sbjct: 786 LPKKTQIIEHCKLSENQLEIYNRYAALQK 814


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 615 WPGLVTTRTGLL-STPGLDTGTTLICY*LATSVYRW 511
           WPG     + L+ ST   +    LIC+     VYRW
Sbjct: 122 WPGFSEYTSNLVHSTERCEVYAGLICFHELAKVYRW 157


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 466 PLLISTDLATIRPEFKQILLN 404
           P   + D+ TIRPEF   LLN
Sbjct: 525 PTTATQDVVTIRPEFNSQLLN 545


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 195 RSLKYRTCTKKKKFGHGMAQATSKFGLTLLELNFTN-SLAK 76
           R L+   C   +KF   +  +TSKF L LL+L + N SL K
Sbjct: 331 RKLQLEICYVLQKFMPNVKDSTSKFSL-LLQLYYCNQSLTK 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,045,782
Number of Sequences: 5004
Number of extensions: 93590
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)