Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m06
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 112 3e-25
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934... 99 2e-21
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230... 86 4e-17
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 85 5e-17
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926... 36 0.056
08_02_0613 - 19330124-19331587 31 1.6
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 30 2.8
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788... 30 2.8
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 3.7
04_01_0301 + 4016588-4016627,4016715-4018837 29 3.7
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 3.7
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 29 6.4
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 29 6.4
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 29 6.4
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 8.5
09_02_0591 - 10997771-10998054,10998671-10999017,10999088-109992... 28 8.5
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 112 bits (270), Expect = 3e-25
Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Frame = -3
Query: 796 YPDFGKLLNATGRSILYS-CSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWASLTK 620
+P L TGR I YS C W ++ + + ++ N WR DI DSWAS+
Sbjct: 159 FPKMSFALRKTGRPIFYSICEWG-----QRNVATWGG--QYGNSWRTTGDINDSWASMLS 211
Query: 619 IMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVDQAKVQMAVWAILAAPLLISTDLA 440
+ D+ D A +A PG WNDPDML +GN G++ D+ V +++WAI APL+I D+
Sbjct: 212 NI----DSNDASASYAKPGGWNDPDMLEVGNGGMTNDEYVVHISLWAIAKAPLIIGCDVR 267
Query: 439 TIRPEFKQILLNRDIIAVNQDKLGKQGLRVWK 344
+I E +IL N ++IA+NQD LG QG +V K
Sbjct: 268 SISRETMEILSNPEVIAINQDPLGVQGKKVRK 299
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 872 TFVEWEIDYLKLDGCYID 819
TF W +DYLK D C D
Sbjct: 134 TFASWGVDYLKYDNCNSD 151
>10_08_0478 +
18192636-18192784,18192991-18193052,18193381-18193437,
18193771-18193805,18193940-18194043,18194238-18194313,
18194469-18194527,18194879-18194962,18195065-18195129,
18195241-18195323,18195670-18195760,18195847-18196157
Length = 391
Score = 99 bits (238), Expect = 2e-21
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
Frame = -3
Query: 685 AEHCNLWRNYDDIEDSWASLTKIMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVDQ 506
A + N WR +DI D+W S+ D + A +A PG WNDPDML +GN G++ D+
Sbjct: 191 AAYGNSWRTTNDIADTWESMVSR----ADENEVWADYARPGGWNDPDMLEVGNGGMTNDE 246
Query: 505 AKVQMAVWAILAAPLLISTDLATIRPEFKQILLNRDIIAVNQDKLGKQGLRVWKKMGSGS 326
V ++WAI APL+I D+ + E IL N+++IAVNQD LG QG +V + GS
Sbjct: 247 YIVHFSLWAISKAPLIIGCDVRHMSQETYDILANKEVIAVNQDALGIQGKKV-RMEGSS- 304
Query: 325 RSKLEIWKRELYDGSFAMAFVSYRDDGIPYAAKFTYYDMQLPQ-SEFEVQDLYKEEEVRS 149
E+W L G + R A + D+ LP + E +DL++ V
Sbjct: 305 ----EVWAAPL-SGYRTAVLLLNRHAAEAAAITAHWDDVGLPAGTAVEARDLWRHATVAG 359
Query: 148 WDG 140
G
Sbjct: 360 AGG 362
>10_08_0482 +
18218163-18218362,18220388-18220446,18223027-18223083,
18223245-18223279,18223617-18223720,18223870-18223945,
18224045-18224103,18224183-18224248,18224338-18224421,
18224503-18224567,18224658-18224740,18224832-18224903,
18225166-18225306,18225395-18225456,18225539-18225605,
18225863-18226075
Length = 480
Score = 85.8 bits (203), Expect = 4e-17
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = -3
Query: 673 NLWRNYDDIEDSWASLTKIMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVDQAKVQ 494
N WR DI D+W S+T D D+ A +AGPG WNDPDML +GN G+S + +
Sbjct: 233 NSWRTTGDIADNWGSMTSR----ADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSH 288
Query: 493 MAVWAILAAPLLISTDLATIRPEFKQILLNRDIIA 389
++WA+ APLLI D+ ++ + K IL N ++ A
Sbjct: 289 FSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVWA 323
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 85.4 bits (202), Expect = 5e-17
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = -3
Query: 796 YPDFGKLLNATGRSILYS-CSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWASLTK 620
YP LN+TGR I YS C W Q++ + N WR DDI+D+W S+T
Sbjct: 176 YPPMRDALNSTGRQIFYSLCEWG--QDDPALWAGKVG-----NSWRTTDDIQDTWKSMTD 228
Query: 619 IMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVDQAKVQMAVWAILAA 467
I D ++ A +AGPG WNDPDML +GN G++ + + ++WA++ A
Sbjct: 229 I----ADKNNKWASYAGPGGWNDPDMLEVGNGGMTFAEYRAHFSIWALMKA 275
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 869 FVEWEIDYLKLDGCY 825
F W +DYLK D CY
Sbjct: 152 FASWGVDYLKYDNCY 166
>01_05_0126 -
18391879-18391937,18392021-18392102,18392508-18392667,
18392739-18392807,18392850-18392992,18393069-18393203,
18393283-18393341,18394090-18394187,18394347-18394510,
18394586-18394647,18394803-18394977,18396331-18396588,
18396694-18396841,18398458-18398813
Length = 655
Score = 35.5 bits (78), Expect = 0.056
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Frame = -3
Query: 781 KLLNATGRSILYSCSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWASLTK---IMA 611
+LL R I+ S S P + + N I++H N++R D D+W ++ + +
Sbjct: 333 ELLAELDRPIILSIS-PGTEVTPALAKN---ISQHVNMYRITGDDWDNWKDVSSHFDVSS 388
Query: 610 WFGDNQDRLAQHAGPGHWNDPDMLLIG---NFG----------LSVDQAKVQMAVWAILA 470
F A W D DML G N G L+ D+ + Q+A+W++
Sbjct: 389 SFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAGVNQGPHRQCELTSDEQRTQIALWSMAK 448
Query: 469 APLLISTDLATIRPEFKQILLNRDIIAVN 383
+PL+ DL + + I+ N ++ +N
Sbjct: 449 SPLMYGGDLRHLDNDTLSIITNPTLLKIN 477
>08_02_0613 - 19330124-19331587
Length = 487
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 784 GKLLNATGRSILYSCSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWASLT 623
G+LL A GRS Y C PA ++ P+ N +YDD++D +S T
Sbjct: 183 GRLLLARGRSCYYVCD-PAANRWVELPPSTLPPEHGINSGLHYDDLDDDASSGT 235
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 313 LIWTWIQIPFFSKHAILVY 369
++WT+I FFS+HA+ VY
Sbjct: 230 ILWTYIYFLFFSRHALAVY 248
>01_06_0261 +
27978341-27978391,27978539-27978683,27978794-27978861,
27979630-27980073,27980163-27980681,27981002-27981214,
27981650-27981805,27982753-27982941
Length = 594
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 247 GIPYAAKFTYYDMQLPQSEFEVQDLYKEEEVRSWDGTSDFEVRINPSG 104
G P ++KF + Q + ++ +D+ +E RSW+ T + R +G
Sbjct: 245 GYPLSSKFAVHTNQGKDNLYQSKDIGMKESGRSWNSTEKLKARSKLNG 292
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 679 HCNLWRNYDDIEDSWASLTKIMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVD-QA 503
H LW+++D + D+ K++ + ++AQ W PD GNF LS D +
Sbjct: 2520 HTILWQSFDHLTDTILPGMKLLLKYNG---QVAQRIVS--WKGPDDPSTGNFSLSGDPNS 2574
Query: 502 KVQMAVW 482
Q+ VW
Sbjct: 2575 DFQVLVW 2581
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/55 (25%), Positives = 33/55 (60%)
Frame = -3
Query: 457 ISTDLATIRPEFKQILLNRDIIAVNQDKLGKQGLRVWKKMGSGSRSKLEIWKREL 293
I+ +L ++ +F+++ N+D++ DKL + L + +K G S +K++ W ++
Sbjct: 334 ITKELEDLKRKFEELQTNKDLVEGENDKLQSEVLAIEEKYGQ-SEAKVK-WLNQI 386
>02_01_0399 -
2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 320 GPGSRSHFFPNTQSLFTQFVLVDGYNVSVQ 409
GPG F Q L + +L+DG++VS+Q
Sbjct: 635 GPGEALQFLNVLQPLLMELILLDGFSVSLQ 664
>08_02_1547 +
27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 225 LRIMTCNYLSRSLKYRTCTKKK 160
+ I+TC+Y+ SLK +CT KK
Sbjct: 439 ITILTCSYVESSLKNMSCTCKK 460
>05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 569 AWTLERP*YVTNWQLRSIGGPS*STNGCLGDPSSTASDQY*FGNDKARIQTNITE 405
A + +P Y+T WQLR G S +T+ G + S Q N AR IT+
Sbjct: 842 AEVVTKPSYITEWQLRDGGSSSYTTSSYAGSSNPEFSRQR-ETNPLARSSPTITK 895
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 799 GYPDFGKLLNATGRSILYSCSWP 731
G+P FG LL A G +L+S WP
Sbjct: 171 GWPFFGMLLEAYGFVVLFSGFWP 193
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 307 WKRELYDGSFAMAFVSYRDDGIPYAAK 227
+K E+ G F F+ Y +DG P A K
Sbjct: 626 FKEEIGKGGFGTVFLGYLEDGTPVAVK 652
>09_02_0591 -
10997771-10998054,10998671-10999017,10999088-10999247,
10999333-10999401,11000256-11000382,11000759-11001021,
11001122-11001279,11001390-11001464,11002876-11002947,
11003039-11003177,11003275-11003744,11003907-11003935
Length = 730
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -3
Query: 490 AVWAILAAPLLISTDLATIRPEFKQILL----NRDIIAVNQDKLGKQGL 356
++W ++ ++ +TD+AT RP+ +++ + D++ V D+ K+ L
Sbjct: 587 SMWKVVNIAMMCTTDIATQRPKMADVVVQLKESLDLVEVQGDRGDKENL 635
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,692,948
Number of Sequences: 37544
Number of extensions: 590167
Number of successful extensions: 1412
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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