Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m06
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...   166   2e-41
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical p...    29   4.3  

>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score =  166 bits (404), Expect = 2e-41
 Identities = 89/241 (36%), Positives = 131/241 (54%), Gaps = 1/241 (0%)
 Frame = -3

Query: 808 MDKGYPDFGKLLNATGRSILYSCSWPAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWAS 629
           M  GYP F K LN TGR I+YSCSWPAY  +   L NY  I ++CN WRN+DDI  SW S
Sbjct: 163 MPIGYPLFEKELNETGRPIMYSCSWPAYLIDHPELVNYNLIGKYCNTWRNFDDINSSWKS 222

Query: 628 LTKIMAWFGDNQDRLAQHAGPGHWNDPDMLLIGNFGLSVDQAKVQMAVWAILAAPLLIST 449
           +  I++++   QD+     GPG W+DPDML+IGN G+++D +  Q  VW I +APL++S 
Sbjct: 223 IISIISYYDKMQDKHIPTHGPGKWHDPDMLVIGNKGITLDMSISQFTVWCIWSAPLIMSN 282

Query: 448 DLATIRPEFKQILLNRDIIAVNQDKLGKQGLRVWKKMGSGSRSKLEIWKRELYDGSFAMA 269
           DL  I   FK +L N++ I +NQD LG  G  +      G   K +I   +    SFA A
Sbjct: 283 DLRIIGDSFKDVLKNKEAIKINQDPLGIMGRLIKNSTDIGVYVK-QITPSKGDKKSFAFA 341

Query: 268 FVSYRDDGIPYAAKFTYYDMQLPQ-SEFEVQDLYKEEEVRSWDGTSDFEVRINPSGVKFY 92
           +++  +       +     + L   + + V D++   ++          V I P+G  F+
Sbjct: 342 YLNRNEKEGYKRIEIQLASIGLTDPAGYYVHDIWSHVDLGLLRSGDSIVVSIAPAGSVFF 401

Query: 91  K 89
           +
Sbjct: 402 R 402



 Score = 36.7 bits (81), Expect = 0.022
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 872 TFVEWEIDYLKLDGCYID 819
           TF  W++DYLKLDGC ID
Sbjct: 142 TFAAWDVDYLKLDGCNID 159


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 599 VTKPGHDLRKRCPRVFYIIIIAPKVTVLCYRC-IVWQYLFFLLI 727
           VTK    +RK   R F       K T LC RC IVW+ L+ L+I
Sbjct: 38  VTKKKKKVRKCVKRGFICCFKFCKYTFLCCRCVIVWRCLWLLII 81


>Z80215-11|CAI70398.1|  181|Caenorhabditis elegans Hypothetical
           protein C36B1.13 protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 547 DMLLIGNFGLSVDQAKVQMAVWAILAAPLLI-STDLATIRPEFKQILLNRDIIAVNQDKL 371
           D+L++G   L   +A  ++ +W I  A LLI    ++ +    +Q  LN D      D  
Sbjct: 31  DLLIVGVVNLDSCEADYRIPIWMISMAGLLIVERMISCMDKSIEQRFLNCDPKPCVHD-- 88

Query: 370 GKQGLRVWKKMGSGSRS 320
           GK+    W+K  + ++S
Sbjct: 89  GKKAFVDWEKRRNSNKS 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,190,332
Number of Sequences: 27780
Number of extensions: 517060
Number of successful extensions: 1151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)