Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m06
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           24   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.4  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 694 ASIAEHC-NLWRNYDDIEDSWASLTKIMAWFGDNQDRL 584
           A+IA H  NLW   +  E S   LTK++  F + QD L
Sbjct: 20  AAIAGHDGNLWAKSEGFEVSKEELTKLVQGF-EEQDIL 56


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -3

Query: 733 PAYQEEKKILPNYASIAEHCNLWRNYDDIEDSWASLTKIM 614
           P  +E +K + +   IA+H      ++ +E+ W  +  ++
Sbjct: 507 PLVREIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAMVL 546


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 644 FYIIIIAPKVTVLCYRCIVWQYLFFLLI 727
           FY+   + +   LC   ++ Q +FFLLI
Sbjct: 257 FYLPADSGEKIALCINILLSQTMFFLLI 284


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +3

Query: 315  NLDLDPDPIFFQTRNPCLPNLSWLTAIMSLFSNICLNSGLIVAKSV 452
            N D D    F   +N          A  +L SN C    L VAKS+
Sbjct: 1600 NFDHDSTNDFVGPKNCLFRKPEHFVASYALISNQCEGDSLNVAKSL 1645


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 54  SKISDIDFLLMNL*NLTPEGLIR 122
           +KIS +D +L  + N+ PE L++
Sbjct: 179 TKISTLDAILDIIRNMVPENLVQ 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,894
Number of Sequences: 438
Number of extensions: 6520
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)