Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m05
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    33   0.054
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    33   0.054
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    30   0.38 
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   4.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   6.2  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   6.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   8.2  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   8.2  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 797 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMS 618
           ++N +DL  +    L I  +G   K+  LET  +E+L K E L E + +       +  +
Sbjct: 564 LRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELSSTRKLLTKNEAA 623

Query: 617 ANIQSSN 597
              Q SN
Sbjct: 624 VAEQQSN 630


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 18/67 (26%), Positives = 38/67 (56%)
 Frame = -1

Query: 770 EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 591
           E ++ + ++ K  ++ +  L+  +D  LN++EIL ER+ T+  Q K ++ +AN + S+  
Sbjct: 234 EAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMKQ-KANSSTANEKLSHME 292

Query: 590 KVESVIT 570
                +T
Sbjct: 293 SSSPTLT 299


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 317  LGNVNILRYLSLAYPTII-PYDHNDHIVDNLLDICHVLER-TSEKNKEAVVNRLFAHYK 147
            +G + IL  L ++ P ++  Y+H+D I  +L   CH L    S+ N +A++  L  + K
Sbjct: 1745 VGYLRILSCLLVSLPAMVYTYEHSDPITFDLSVFCHKLATLASQFNDDALIELLDTYLK 1803


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -1

Query: 842 VDHDDKIELPKCMYHIKNPIDL---TEEDEICLKINEK-GPNNKMTELETRQDELLNKLE 675
           V+++ KI   K +   K  +DL   +E+D+  L+   K G +        R +++++  E
Sbjct: 174 VNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIRE 233

Query: 674 ILYERIKTISSQCKLDN 624
           +L E  K I   CK++N
Sbjct: 234 VLGEEGKNIKIICKIEN 250


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 537 IRTQHQDNFLWCNYRFDF*GI*GLNISTHIVKLTLRANCL 656
           ++ +HQDN LW  ++F    I  L++S  +V++  R N L
Sbjct: 122 LKEEHQDNCLWRLHKFP-PDIYHLSVSAELVQVGRRFNSL 160


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 519 EYHFEKIQFTNTYNLSCPF 463
           EY +    FTN YN SC +
Sbjct: 215 EYRYVDFNFTNVYNTSCEY 233


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 605 SSNASKVESVITPEEVVLVLSPDSLPWYLNI 513
           S++   + S+ITP E   +   D + WY++I
Sbjct: 410 SASKQPLHSLITPPEQEFIQKLDQIGWYISI 440


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -1

Query: 389 VNLRLIFKAAADSELKLSALSTPILGNVNILRYLSL-----AYPTIIPYDHNDHIVDNLL 225
           V L+   +A    E    A+  P++   N+L +        AYPT   YD    IVD+L 
Sbjct: 341 VGLKNCIRAKISYENPNKAMRDPVIYRCNLLPHHRTGTKYRAYPT---YDFACPIVDSLE 397

Query: 224 DICHVLERTSEKNK 183
            + H L  T  +++
Sbjct: 398 GVTHALRTTEYRDR 411


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 795 NVVHTFR-QLYFIIVVNDPXHNIHHYL 872
           ++ H F+ +L+  IVVN+  H+I HY+
Sbjct: 414 SIYHLFQSELFPKIVVNESRHHIPHYI 440


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 698 DELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYL 519
           D + N+L    +R +   SQ K     AN+   N++ +E  I  +E +L  +PD L  + 
Sbjct: 32  DMITNELRNAIQRQRE-GSQSK--PQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFK 88

Query: 518 NIILK 504
             ++K
Sbjct: 89  EAVMK 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,320
Number of Sequences: 5004
Number of extensions: 71196
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)