Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m05
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0143 - 944169-947273 30 2.1
07_03_1248 - 25165929-25166891,25169159-25169473 30 2.8
03_03_0012 + 13737898-13740031,13740347-13740486 29 3.7
11_01_0782 + 6543906-6544702,6545717-6547850 29 4.9
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530... 29 4.9
10_03_0044 + 7328777-7328923,7329048-7329074 29 6.5
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 8.6
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 28 8.6
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 28 8.6
>05_01_0143 - 944169-947273
Length = 1034
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 794 KNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS 642
K + LTE I N K K+TE+ET+ E LN++ + +++ +S
Sbjct: 647 KEKVLLTEYTSILR--NYKNEKRKLTEVETKNQERLNEMSAMISELRSANS 695
>07_03_1248 - 25165929-25166891,25169159-25169473
Length = 425
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = -1
Query: 701 QDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWY 522
+D LLNK I R++ Q + N SNA+ ++ + SLP Y
Sbjct: 135 EDMLLNKKHIFVPRVEPTPHQIEETEDDYNDDGSNANVASPNSNYDQD--LFGSISLPHY 192
Query: 521 LNIILKKSNLPIHTTCHVHSSVPSEK 444
+++L +++L +H H + K
Sbjct: 193 QDMLLNQNHLSVHRVEPAHDQLEKIK 218
>03_03_0012 + 13737898-13740031,13740347-13740486
Length = 757
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = -1
Query: 650 ISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYLNIILKKSNLPI 486
ISS CKL N +++ S + P+ VV ++ Y +++ K +
Sbjct: 508 ISSNCKLQNWPSSLNDDGWSGTSFLFLPDHVVTIMRFHIATCYCELVMHKEGFSV 562
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 410 KTSENPK--VNLRLIFKAA-ADSELKLSALSTPILGNVNILRYLSLAYPTIIPYDHNDHI 240
K E+PK V LR + + + S KL+ L N+ L+YL L + + D+
Sbjct: 758 KLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNA 817
Query: 239 VDNLLDICHVLER 201
+ +LL +C VL R
Sbjct: 818 LPSLLSLCFVLNR 830
>02_01_0708 -
5298456-5298664,5299615-5299768,5300209-5300301,
5300644-5300847,5302034-5302174,5302723-5302827,
5303485-5303874,5304573-5304713,5304756-5304845,
5305779-5306288
Length = 678
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 194 EKNKEAVVNRLFAHYKTWIYGDK-FSVVDLA 105
+ K+ + N L A +K W+YG+K SV+++A
Sbjct: 590 DNRKKELTNALHAQFKDWLYGNKRKSVLEMA 620
>10_03_0044 + 7328777-7328923,7329048-7329074
Length = 57
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDL--TEEDEICLK 750
KI++PKC HI+ PI L + +IC++
Sbjct: 12 KIKMPKCWNHIRTPITLLISNVRQICIR 39
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -1
Query: 779 LTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS-QCKLDNMSANIQS 603
LT+++ ++ + + ++ RQ+ + N + R T++ + NMS +QS
Sbjct: 627 LTDQENAVSQL-QSSHTDYFVQIRPRQEYVTNYSQSQLSRAATVNQIETNQRNMSGQLQS 685
Query: 602 SNASKVESVITPEE 561
S A ++ + T +E
Sbjct: 686 SQADSLDQIQTEQE 699
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 734 PNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSA-NIQSSNASKVESVIT 570
P + +L D KLE+L+E +K C LD M A +Q + A ++ + I+
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLG-CTLDGMGAILLQLNYAPRIHTAIS 193
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 761 ICLKINEKGPNNKMTELETRQDELLNKL 678
ICL + E+GP+ T L+T+ E N++
Sbjct: 774 ICLGLWERGPSRIKTSLQTKMGETANRM 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,687,381
Number of Sequences: 37544
Number of extensions: 374115
Number of successful extensions: 1020
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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