Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m05
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013630-1|AAH13630.1| 320|Homo sapiens JTV1 gene protein. 63 1e-09
U24169-1|AAC50391.1| 312|Homo sapiens JTV-1 protein. 63 1e-09
BC010156-1|AAH10156.1| 320|Homo sapiens JTV1 gene protein. 63 1e-09
BC002853-1|AAH02853.1| 320|Homo sapiens JTV1 gene protein. 63 1e-09
AC005995-2|AAS00389.1| 320|Homo sapiens unknown protein. 63 1e-09
>BC013630-1|AAH13630.1| 320|Homo sapiens JTV1 gene protein.
Length = 320
Score = 63.3 bits (147), Expect = 1e-09
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTI 648
++ELP CMY + N + ++ N + LE+RQD++L +L L + +
Sbjct: 17 RVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELKAAVDGL 76
Query: 647 SSQCKLDNMSANIQ-----------SSNASKVESVITPE-----EVVLVLSPDSLPWYLN 516
S + + ++ ++NA + SV+ + ++V+ +P S P L
Sbjct: 77 SKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPGSPPLSLL 136
Query: 515 II--LKKSNLPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSENPKVNLRLIFKAAADSE 348
++ L + + +T H HSSV S E L K K + ++ ++ LI+K ++
Sbjct: 137 VLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQ 196
Query: 347 LKLSALS-TPILGNVNILRYLSLAYPTIIPYDH---NDHIVDNLLDIC-HVLERTSEKNK 183
+K S + PI G NI R+L ++ H N ++D+ +DI L+ S K K
Sbjct: 197 MKFSIQTMCPIEGEGNIARFLF----SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEK 252
Query: 182 EAVVNRLFAHY--KTWIYGDKFSVVDLAAYNLIKQWR----NTPKFVSKVWFDKCEKL 27
AV + + W+ G++ +V D+ +++++Q P V + W CE L
Sbjct: 253 AAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR-WMRSCENL 309
>U24169-1|AAC50391.1| 312|Homo sapiens JTV-1 protein.
Length = 312
Score = 62.9 bits (146), Expect = 1e-09
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTI 648
++ELP CMY + N + ++ N + LE+RQD++L +L L + +
Sbjct: 17 RVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELKAAVDGL 76
Query: 647 SSQCKLDNMSANIQ-----------SSNASKVESVITPE-----EVVLVLSPDSLPWYLN 516
S + + ++ ++NA + SV+ + ++V+ +P S P L
Sbjct: 77 SKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLL 136
Query: 515 II--LKKSNLPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSENPKVNLRLIFKAAADSE 348
++ L + + +T H HSSV S E L K K + ++ ++ LI+K ++
Sbjct: 137 VLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQ 196
Query: 347 LKLSALS-TPILGNVNILRYLSLAYPTIIPYDH---NDHIVDNLLDIC-HVLERTSEKNK 183
+K S + PI G NI R+L ++ H N ++D+ +DI L+ S K K
Sbjct: 197 MKFSIQTMCPIEGEGNIARFLF----SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEK 252
Query: 182 EAVVNRLFAHY--KTWIYGDKFSVVDLAAYNLIKQWR----NTPKFVSKVWFDKCEKL 27
AV + + W+ G++ +V D+ +++++Q P V + W CE L
Sbjct: 253 AAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR-WMRSCENL 309
>BC010156-1|AAH10156.1| 320|Homo sapiens JTV1 gene protein.
Length = 320
Score = 62.9 bits (146), Expect = 1e-09
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTI 648
++ELP CMY + N + ++ N + LE+RQD++L +L L + +
Sbjct: 17 RVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELKAAVDGL 76
Query: 647 SSQCKLDNMSANIQ-----------SSNASKVESVITPE-----EVVLVLSPDSLPWYLN 516
S + + ++ ++NA + SV+ + ++V+ +P S P L
Sbjct: 77 SKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLL 136
Query: 515 II--LKKSNLPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSENPKVNLRLIFKAAADSE 348
++ L + + +T H HSSV S E L K K + ++ ++ LI+K ++
Sbjct: 137 VLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQ 196
Query: 347 LKLSALS-TPILGNVNILRYLSLAYPTIIPYDH---NDHIVDNLLDIC-HVLERTSEKNK 183
+K S + PI G NI R+L ++ H N ++D+ +DI L+ S K K
Sbjct: 197 MKFSIQTMCPIEGEGNIARFLF----SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEK 252
Query: 182 EAVVNRLFAHY--KTWIYGDKFSVVDLAAYNLIKQWR----NTPKFVSKVWFDKCEKL 27
AV + + W+ G++ +V D+ +++++Q P V + W CE L
Sbjct: 253 AAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR-WMRSCENL 309
>BC002853-1|AAH02853.1| 320|Homo sapiens JTV1 gene protein.
Length = 320
Score = 62.9 bits (146), Expect = 1e-09
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTI 648
++ELP CMY + N + ++ N + LE+RQD++L +L L + +
Sbjct: 17 RVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELKAAVDGL 76
Query: 647 SSQCKLDNMSANIQ-----------SSNASKVESVITPE-----EVVLVLSPDSLPWYLN 516
S + + ++ ++NA + SV+ + ++V+ +P S P L
Sbjct: 77 SKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLL 136
Query: 515 II--LKKSNLPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSENPKVNLRLIFKAAADSE 348
++ L + + +T H HSSV S E L K K + ++ ++ LI+K ++
Sbjct: 137 VLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQ 196
Query: 347 LKLSALS-TPILGNVNILRYLSLAYPTIIPYDH---NDHIVDNLLDIC-HVLERTSEKNK 183
+K S + PI G NI R+L ++ H N ++D+ +DI L+ S K K
Sbjct: 197 MKFSIQTMCPIEGEGNIARFLF----SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEK 252
Query: 182 EAVVNRLFAHY--KTWIYGDKFSVVDLAAYNLIKQWR----NTPKFVSKVWFDKCEKL 27
AV + + W+ G++ +V D+ +++++Q P V + W CE L
Sbjct: 253 AAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR-WMRSCENL 309
>AC005995-2|AAS00389.1| 320|Homo sapiens unknown protein.
Length = 320
Score = 62.9 bits (146), Expect = 1e-09
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Frame = -1
Query: 827 KIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTI 648
++ELP CMY + N + ++ N + LE+RQD++L +L L + +
Sbjct: 17 RVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELKAAVDGL 76
Query: 647 SSQCKLDNMSANIQ-----------SSNASKVESVITPE-----EVVLVLSPDSLPWYLN 516
S + + ++ ++NA + SV+ + ++V+ +P S P L
Sbjct: 77 SKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLL 136
Query: 515 II--LKKSNLPIHTTCHVHSSVPS--EKLAKIKAFTQKLKTSENPKVNLRLIFKAAADSE 348
++ L + + +T H HSSV S E L K K + ++ ++ LI+K ++
Sbjct: 137 VLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQ 196
Query: 347 LKLSALS-TPILGNVNILRYLSLAYPTIIPYDH---NDHIVDNLLDIC-HVLERTSEKNK 183
+K S + PI G NI R+L ++ H N ++D+ +DI L+ S K K
Sbjct: 197 MKFSIQTMCPIEGEGNIARFLF----SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEK 252
Query: 182 EAVVNRLFAHY--KTWIYGDKFSVVDLAAYNLIKQWR----NTPKFVSKVWFDKCEKL 27
AV + + W+ G++ +V D+ +++++Q P V + W CE L
Sbjct: 253 AAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR-WMRSCENL 309
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,172,455
Number of Sequences: 237096
Number of extensions: 2227974
Number of successful extensions: 8905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8900
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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