Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m05
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 32 0.48
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 32 0.48
Z68296-3|CAB54197.2| 223|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical p... 29 4.4
Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z92849-14|CAE17857.1| 359|Caenorhabditis elegans Hypothetical p... 29 5.9
Z78414-4|CAE17982.1| 359|Caenorhabditis elegans Hypothetical pr... 29 5.9
U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g... 29 5.9
U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g... 29 5.9
U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g ... 29 5.9
U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g ... 29 5.9
AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein. 29 5.9
AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protei... 29 5.9
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 28 7.8
L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical p... 28 7.8
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 28 7.8
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 28 7.8
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = -1
Query: 785 IDLTEEDEICLKINE---KGPNNKMTELETRQDELLNKLEILYE--RIKTISSQCKLDNM 621
+ LT+ D+ L NE + NN++ +L + +L+NK+ I E R TI+ +C L+
Sbjct: 653 VQLTQMDDDQLLENEQEARDRNNQIMQLRAQVQQLINKMSIEQELSRCVTIALRCVLNGE 712
Query: 620 SANIQ 606
+A I+
Sbjct: 713 TAEIK 717
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = -1
Query: 785 IDLTEEDEICLKINE---KGPNNKMTELETRQDELLNKLEILYE--RIKTISSQCKLDNM 621
+ LT+ D+ L NE + NN++ +L + +L+NK+ I E R TI+ +C L+
Sbjct: 609 VQLTQMDDDQLLENEQEARDRNNQIMQLRAQVQQLINKMSIEQELSRCVTIALRCVLNGE 668
Query: 620 SANIQ 606
+A I+
Sbjct: 669 TAEIK 673
>Z68296-3|CAB54197.2| 223|Caenorhabditis elegans Hypothetical
protein C46C2.5 protein.
Length = 223
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = -1
Query: 725 KMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKV 585
++ E+ET Q+ N +++LY++ S L ++S +I+SSN S +
Sbjct: 59 ELREIETLQNSKFNNVDVLYDKDLMKSLFGDLKSISLSIKSSNCSSM 105
>Z98877-1|CAB11569.2| 343|Caenorhabditis elegans Hypothetical
protein Y69H2.1 protein.
Length = 343
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 657 YPLV*YF*LVQEFILPCLQFSHLIIRTLFIDFQTNFIFFCKIDRIFN-----VVHTFRQL 821
YP V + L++ F+L C Q + LI + ID +F K ++FN V+ TF +L
Sbjct: 116 YPSVLHCSLLRHFVLACFQSAGLITVPIAID-HICLVFLKKKLKVFNLVVIQVIITFVEL 174
Query: 822 YFII 833
+F +
Sbjct: 175 FFTL 178
>Z70782-10|CAN86639.1| 456|Caenorhabditis elegans Hypothetical
protein R04B5.4b protein.
Length = 456
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 681 LVQEFILPCLQ-FSHLIIRTLFIDFQTNFIFFCKIDRIFNVVHTFRQLYFIIVVND 845
LV ++I C F L + I FQ F+FFC ++R F V + R ++ D
Sbjct: 247 LVADWIEWCFDDFGLLPVDQKTILFQNFFVFFCMLERAFMTVKSGRDGIVVMASKD 302
>Z70782-9|CAA94840.1| 453|Caenorhabditis elegans Hypothetical
protein R04B5.4a protein.
Length = 453
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 681 LVQEFILPCLQ-FSHLIIRTLFIDFQTNFIFFCKIDRIFNVVHTFRQLYFIIVVND 845
LV ++I C F L + I FQ F+FFC ++R F V + R ++ D
Sbjct: 247 LVADWIEWCFDDFGLLPVDQKTILFQNFFVFFCMLERAFMTVKSGRDGIVVMASKD 302
>Z92849-14|CAE17857.1| 359|Caenorhabditis elegans Hypothetical
protein H12D21.11 protein.
Length = 359
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 167 YLQLLLYFFLMSSPKRGKCLIDYQLCDHY 253
Y+ LLY FL+SS + +CL QLC +
Sbjct: 194 YISNLLYNFLISSVIQDRCLYIIQLCSTF 222
>Z78414-4|CAE17982.1| 359|Caenorhabditis elegans Hypothetical
protein H12D21.11 protein.
Length = 359
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 167 YLQLLLYFFLMSSPKRGKCLIDYQLCDHY 253
Y+ LLY FL+SS + +CL QLC +
Sbjct: 194 YISNLLYNFLISSVIQDRCLYIIQLCSTF 222
>U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform e protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 81 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 139
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 140 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 181
>U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform c protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 181 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 239
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 240 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 281
>U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform b protein.
Length = 782
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 539 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 597
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 598 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 639
>U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform a protein.
Length = 819
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 576 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 634
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 635 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 676
>AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein.
Length = 819
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 576 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 634
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 635 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 676
>AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protein
protein.
Length = 782
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = -1
Query: 548 LSPDSLPWYLNIILKKSNLPIHTTCHVHSSVPSEKLAKIKAFTQKLKTSENPKVNLRLIF 369
LSP+ P + + N ++ HS++ + + +FT K S + K NLR +
Sbjct: 539 LSPEQSPTDHHFLCPDDNGGVYGAGPAHSAIKKSSVRRAASFTFSPKHSSS-KTNLRQLN 597
Query: 368 KAAADSELKLSALSTPILGNVNILR-YLSLAYPTIIPYDHNDHI 240
D E K PI ++ LR + LA T Y D +
Sbjct: 598 GREEDKEKK--RFLGPISRTLSYLRSKMDLALSTSSLYPSRDDV 639
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +3
Query: 726 IIRTLFIDFQTNFIFFCKI----DRIFNVVHTFRQLY 824
I+ +++ F F++FCKI IFN++ F QL+
Sbjct: 181 ILYSIYFGFLALFVYFCKIHHLFSSIFNLIVNFCQLF 217
>L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical
protein F22B7.1 protein.
Length = 348
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 230 LLDICHVLERTSEKNKEAVVNRLFAHYKTWIYGDK 126
L+D + +++SE K ++ RL+ + W+YG K
Sbjct: 173 LIDQMAIQQKSSETEKMSIWARLWENLSVWMYGKK 207
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -1
Query: 797 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS 642
++ ID+ ++E+ + +K N ++ELL+KL ++E K++ +
Sbjct: 231 VRKCIDMAVDEEVFTRCTDKNLVNLTPSERAEREELLSKLSTVFEDEKSLGA 282
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -1
Query: 797 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS 642
++ ID+ ++E+ + +K N ++ELL+KL ++E K++ +
Sbjct: 293 VRKCIDMAVDEEVFTRCTDKNLVNLTPSERAEREELLSKLSTVFEDEKSLGA 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,432,058
Number of Sequences: 27780
Number of extensions: 381310
Number of successful extensions: 1201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -