Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m05
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.40 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.40 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -1

Query: 524 YLNIILKKSNLPIHTTCHVHS--SVPSEKLAKIKAFTQKLKTSENPKVNLRLIFKA-AAD 354
           Y+  +++K +L IH TC VH+   +P        A    L T  +   +L  IF A A +
Sbjct: 314 YITPLIQK-HLKIHDTCGVHNLHGMPGILGGIFGALMAALATEASYDYSLYEIFPARAPN 372

Query: 353 SELKLSAL 330
           SE KL+ +
Sbjct: 373 SETKLAEM 380


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
 Frame = +1

Query: 28  NFSHLSNHTLETNL---GVFLHCL------IKLYAAKSTTEN 126
           N SH  NH+ + NL   GV+++CL      + L+A K   +N
Sbjct: 573 NISHFINHSCDPNLAVYGVWINCLDPNLPKLALFATKDIKQN 614


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 231 SIRHLPRFGEDIRKK*RSSCK 169
           ++RHLPR  +D  KK  + CK
Sbjct: 80  ALRHLPRSMQDSTKKLFNKCK 100


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 254 HNDHIVDNLLDICHVLERTSEKNKEAVV 171
           H   ++++LLD  +VLER      E +V
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEPLV 50


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   KTVRVKNIIFHIYQTTL*RQT*VYFSTA*LSCMLPS 112
           + V V+ ++   Y T + ++  +  ++A L C++PS
Sbjct: 93  RDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 40  NVKNYVLNSHCFN 2
           NVK  + N+HC N
Sbjct: 404 NVKELIRNTHCVN 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,605
Number of Sequences: 438
Number of extensions: 4333
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)