Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m04
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   4.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.6  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    25   7.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.7  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   9.7  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.7  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.7  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 75  NTPAPAPDKDCPLRP 31
           N P P PD +CP+ P
Sbjct: 573 NAPIPYPDANCPMAP 587


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 156  GMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAP 55
            GM       T  VRP  A  PP+M  P TP P P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAA-PPQMSAP-TPPPPP 1711


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 433 GGLAFLLTVAMNDITADRVTRKINSCLFITYG 528
           GG+  L+T+ + DIT  +       C+ +T+G
Sbjct: 193 GGITSLVTIVIADITPLQTRPYYTGCMGVTWG 224


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 40  WTILIRSRSWRIRTLHFRRVTGTRRSHYRG 129
           W +L   + W   + HF  V   RR +Y G
Sbjct: 295 WMLLNDGKGWESSSSHFSVVAMKRRKNYLG 324


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 433 GGLAFLLTVAMNDITADRVTRKINSCLFITYG 528
           GG+  L+T+ + DIT  +       C+ +T+G
Sbjct: 193 GGIMSLVTIVIADITPLQTRPYYTGCMGVTWG 224


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 323 PLYIVFGGGYFKFGVIGSI*VYLGYEE 403
           PL  + G  +FK GVI S   Y+ YE+
Sbjct: 246 PLASILGNDFFKRGVIRSQTDYIVYEK 272


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 153 MFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPD 52
           M   + TLT IVR P A  P K    N    A D
Sbjct: 568 MMDYDGTLTPIVRDPNAAVPSKKLLDNLATLAAD 601


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 323 PLYIVFGGGYFKFGVI 370
           PLY +FG  +F FG++
Sbjct: 516 PLYFMFGFSFFCFGIL 531


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 182 PDNNKATSFVCSDFDLCVNPFRTSILSWIILSKYFLGVR----CHRRVGLIPLYIVFGGG 349
           PDN + +S + S     +  F  S LS  +++KY++  +       R  LI LY  F  G
Sbjct: 25  PDNIQVSSSLLSFLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYYNFMDG 84

Query: 350 YFK 358
           + K
Sbjct: 85  FNK 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,781
Number of Sequences: 5004
Number of extensions: 53668
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)