Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m04
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1351 - 32827136-32827984 31 0.80
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 30 1.1
03_06_0600 + 34988743-34989407,34990033-34990051 29 2.4
09_01_0067 + 1001137-1002708,1003476-1003529 29 3.2
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569 29 3.2
10_02_0079 + 5016115-5016936 28 5.6
07_03_1700 - 28810239-28810870,28811304-28812594 28 5.6
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 27 7.5
06_01_1013 - 7931756-7935109 27 7.5
04_04_0622 + 26663471-26663620,26663822-26664384,26664483-266646... 27 7.5
04_03_0799 - 19805190-19805749,19806316-19806403 27 7.5
01_07_0040 + 40672633-40673369,40673412-40673558,40675019-406752... 27 7.5
01_01_1125 - 8920590-8924372 27 7.5
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 27 9.9
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 27 9.9
03_04_0242 - 19238016-19238679,19239487-19239929 27 9.9
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307... 27 9.9
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 27 9.9
01_05_0515 - 22884642-22885160 27 9.9
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 27 9.9
>04_04_1351 - 32827136-32827984
Length = 282
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -1
Query: 201 VALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPL 37
+A ++ G +G G +SP + AC P P+TP P+ CP+
Sbjct: 151 IAPVVGGIIGGGSGGGGYSPSPSPPKRHGGRKACPPSPTPTPSTPTPSSSDTCPI 205
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 111 PGACDPPKMQCPNTPAPAPDKDCPLRP 31
P A PP P+ PAPAP P RP
Sbjct: 210 PAAKAPPAAPAPSMPAPAPTLSSPERP 236
>03_06_0600 + 34988743-34989407,34990033-34990051
Length = 227
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 126 TIVRPPGACDPPKMQCPNTPAPAP 55
+++ PPG+ P + CP P P P
Sbjct: 136 SLLHPPGSAASPSVSCPPPPPPPP 159
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 114 PPGACDPPKMQCPNTPAPAPDKDCP 40
PP PP P P P PD D P
Sbjct: 20 PPPPSPPPADHAPPQPLPTPDDDAP 44
>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
Length = 109
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -1
Query: 186 SGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKD-CPLR 34
SG + G+F P + T +PP A QC +T P CP R
Sbjct: 5 SGASSLPTGGGIFEPPSSSTATAQPPVATAAIHFQCASTACRCPHLSLCPQR 56
>10_02_0079 + 5016115-5016936
Length = 273
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -1
Query: 198 ALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCP 40
A+L SG+ G A + + +L P A PPK TP AP K+ P
Sbjct: 130 AVLCSGSGGPAPGHQLRLYTLSLEVWGAAPTAVAPPKPAAAATPTTAPAKNAP 182
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -1
Query: 111 PGACDPPKMQC--PNTPAPAP 55
PG C PP +C P++P P+P
Sbjct: 221 PGLCGPPLAKCLLPDSPTPSP 241
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 195 LLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 31
++LS + A S S + T PP +PP Q P P+P P + P +P
Sbjct: 543 IILSAAVLAAGSSTPSSSQAMTATAPAPPSPPEPPSPQHP--PSPPPLRSPPRQP 595
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 81 CPNTPAPAPDKDCPLRPCDK*SVIREC 1
CP A APD+ C PC K +++R C
Sbjct: 281 CPPCKAFAPDRLC---PCGKQTIVRRC 304
>04_04_0622 +
26663471-26663620,26663822-26664384,26664483-26664675,
26664801-26664865,26665182-26665398,26665485-26665823
Length = 508
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 147 SPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 31
SPE T+ R PP+ P PAPAPD P
Sbjct: 69 SPEPE-PTLPRLGNLAPPPRQPPPPAPAPAPDAAAAASP 106
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 114 PPGACDPPKM-QCPNTPAPAPDKDCPLRPCD 25
PP AC PP QC + PAP K P +PC+
Sbjct: 110 PPPACCPPSTHQCYHC-CPAPPKPKP-KPCE 138
>01_07_0040 +
40672633-40673369,40673412-40673558,40675019-40675223,
40676730-40676816
Length = 391
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 213 QTKLVALLLSGTLGVAYSYGMFS-PEKTLTTIVRPPGACDPPKMQCPNTPA 64
+T L+ LLL L +A S + S P T TT +P PP+ + P+ A
Sbjct: 8 KTLLLLLLLVFFLSLACSQPLHSEPMSTTTTATQPAPPPPPPQSKIPHAEA 58
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 153 FRTNTPHLMFPIITKRPVSFAPISISA 233
FR TPHL PI + + PISI A
Sbjct: 106 FRLETPHLNKPISKQAQNQYKPISIQA 132
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Frame = -1
Query: 129 TTIVRPPGACD---PPKMQCPNTPAPAPDKDCP 40
T + PG C PP QC P P P D P
Sbjct: 95 TRALELPGVCKVQAPPISQCTAVPTPPPAPDTP 127
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 141 EKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRPC 28
++ L V PP PP C P P +DC +PC
Sbjct: 70 KEILIVDVWPPPLPQPPP-PCKPPPCEKPPEDCKPKPC 106
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 147 SPEKTLTTIV--RPPGACDPPKM--QCPNTPAPAPDK 49
+P K L + +PP A P K+ + P TPAP+P K
Sbjct: 325 TPAKKLEQLAQRKPPSAPKPRKVWKEKPKTPAPSPPK 361
>02_05_0841 +
32129863-32130294,32130395-32130459,32130565-32130774,
32130943-32131024
Length = 262
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 36 SVDNPYQEPELAY*DIAFSAGHRH-PEVSLSWSASSRG*TFRTNTPHLMFP 185
SVD Q+ LA AG H PE S S SAS R R TP P
Sbjct: 126 SVDAAAQDRSLACRSDVAEAGSEHVPEGSASDSASGRDRERRETTPSSFLP 176
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 84 QCPNTPAPAPDKDCPLRP 31
Q P++P+P P KD P +P
Sbjct: 141 QQPSSPSPTPTKDLPCKP 158
>01_05_0515 - 22884642-22885160
Length = 172
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 338 TQCTTVSNRPAYGISHRGNTSIE*SKTK*KYEMDLRRDRNRSKR 207
T C TV RPA G + ++E ++ + + +M++ ++R R R
Sbjct: 100 TLCLTVPKRPAGGAAEVVMATMEDARVEAEMQMEMEKERARWDR 143
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 122 IVVSVFSGLNIPYEYATPNVPDNNKATSFVCSDFDLCVNPFRTS 253
I +F+GL Y P DNN+ +C++ V P T+
Sbjct: 40 IAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTT 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,031
Number of Sequences: 37544
Number of extensions: 351532
Number of successful extensions: 1149
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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