Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m04
         (549 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   0.94 
AJ420785-3|CAD12783.1|  380|Anopheles gambiae serpin protein.          25   1.6  
AJ271353-1|CAB69785.1|  380|Anopheles gambiae putative serine pr...    25   1.6  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   2.9  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   5.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 0.94
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 123 IVRPPGACDPPKMQCPNTPAP 61
           ++RPPG   PP+   P  P P
Sbjct: 191 MMRPPGNVGPPRTGTPTQPQP 211


>AJ420785-3|CAD12783.1|  380|Anopheles gambiae serpin protein.
          Length = 380

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 533 IHPYVMNKHEFIFLVTLSAVISFIATVSK 447
           +HPY    H F++++    ++ F+  V+K
Sbjct: 349 MHPYFTVDHPFLYVLRHQQMVYFVGRVAK 377


>AJ271353-1|CAB69785.1|  380|Anopheles gambiae putative serine
           protease inhibitor protein.
          Length = 380

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 533 IHPYVMNKHEFIFLVTLSAVISFIATVSK 447
           +HPY    H F++++    ++ F+  V+K
Sbjct: 349 MHPYFTVDHPFLYVLRHQQMVYFVGRVAK 377


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 LTIVVSVFSGLNIPYEYATPNV 181
           L IVV+  +G+ I Y Y  PNV
Sbjct: 73  LGIVVADVNGITIVYYYVKPNV 94


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 323 VSNRPAYGISHRGNTSIE*SKTK*KYEMDLRRDRNRS 213
           ++NR  YGIS+ G+   E  + K       + DR  S
Sbjct: 318 INNRIIYGISNNGSELFEIDRLKGSLRTKQKLDREDS 354


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,855
Number of Sequences: 2352
Number of extensions: 13532
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)