Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m04
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    32   0.24 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   0.72 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   6.7  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    27   6.7  
AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 114 PPGACDPPKMQCPNTPAPAPDKDCPLRP 31
           PP  C PP M CP  P P P   CP  P
Sbjct: 52  PPQFCPPPPM-CPPPPPPPPPPMCPPPP 78



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 114 PPGACDPPKMQCPNTPAPAPDKDCPLRP 31
           PP  C PP + CP  P   P + CP  P
Sbjct: 34  PPPMCAPPPLPCPPPPI-CPPQFCPPPP 60


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = -1

Query: 114 PPGACDPPK---MQCPNTPAPAPDKDCP 40
           PP  C PP    M CP  P P P   CP
Sbjct: 67  PPPICPPPPPPPMPCPPPPPPMPRPSCP 94


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 144 PEKTLTTIVRP-PGACDPPKMQCPNTPAPAP 55
           P   + +  RP P  C  P M+CPN   PAP
Sbjct: 180 PAPCVCSAPRPVPCRCGAPPMECPNCDMPAP 210


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 93   PKMQCPNTPAPAPDKDCPLRPCD 25
            PK +C   P P   + C L PCD
Sbjct: 1859 PKEKCELFPKPNESQTCELNPCD 1881


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 93   PKMQCPNTPAPAPDKDCPLRPCD 25
            PK +C   P P   + C L PCD
Sbjct: 1859 PKEKCELFPKPNESQTCELNPCD 1881


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 498 LPRNSVSCNIVHSNRQQKRQTSKMIVKSP 412
           L +  V+CN+V +N    R+TSK+  + P
Sbjct: 482 LIKTEVTCNLVSTNGNNFRRTSKLCFEKP 510


>AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.1 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 89  FGGSQAPGGLTIVVSVFSGLNIPYEYATPNVPDNNKATSFVC 214
           F  + + GGL   + +   + IP  Y+ P +PD  +    +C
Sbjct: 137 FSSNNSSGGLFSSILILISIIIPSVYSEPKLPDCEQIPKVLC 178


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 339  NTMYNGIKPTRLWHLTPRKYFDRMIQDK 256
            NT+  G   +  W  +P +YFD M++ K
Sbjct: 1594 NTLTRGDVSSLTWFESPNQYFDSMVKSK 1621


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 122 IVVSVFSGLNIPYEYATPNVPDNNKATSFVCSDFDLCVNPFRTSILSWIILSKY 283
           + +SVF  L +P   +T  V +N     F   DF+  +N        W I+SKY
Sbjct: 3   LFLSVFLLLILPL-ISTSAVENNQNIVDFSVKDFNKNINSIDILNKKWDIVSKY 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,421
Number of Sequences: 27780
Number of extensions: 310327
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)