Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m03
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981     31   1.4  
06_03_1405 - 29938558-29938676,29939045-29939819                       31   1.4  
07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823           29   3.3  
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226...    29   4.4  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    29   4.4  

>08_02_0339 + 15968610-15969227,15969304-15969708,15969817-15969981
          Length = 395

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 424 GTFGRLHIPNCHLSVFFLYHLQN-IPYRTQSPISLDTALSPVAGT*TWLITF-SYVALWM 251
           G++ R H+P  HL    +Y ++N IP+     I+  T L P AG    +  F SY+A +M
Sbjct: 135 GSWQRQHVPPQHLEHDIIYLVENQIPFFILEKINEITGLIPTAGGSQLVRHFCSYIAEYM 194


>06_03_1405 - 29938558-29938676,29939045-29939819
          Length = 297

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 622 ACRGERICRTSVHVLAHTYDAYTCVHVRTMRIRA 521
           AC     C   VH L+HT   +TCVHV T  + A
Sbjct: 45  ACTHTHTCNPPVHDLSHT---HTCVHVHTKIVSA 75


>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
          Length = 224

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 690 CIINYICLGFCDSKCMCSGDKYQLVGE-NGFAARPYTCLHIR 568
           C I YIC   C+ +C+       +VG  N   ARP T L +R
Sbjct: 77  CEIIYICSFACEGRCLSGPIWNHIVGYWNASKARPETVLFLR 118


>11_01_0302 +
           2261489-2261738,2261917-2262064,2262124-2262205,
           2262501-2262566,2262609-2262686,2262794-2262808,
           2263618-2263764
          Length = 261

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 279 LHSVTLHFGCVIKELISGIPRNCGRNQS*NQTKLKI 172
           +H+++LH G  I+  +S +  NCG N   N ++L I
Sbjct: 94  IHAISLHPGASIEHQLSYVFANCGCNSIFNVSELAI 129


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 279 LHSVTLHFGCVIKELI 232
           L  VTLHFGC++KE I
Sbjct: 101 LEDVTLHFGCLLKETI 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,291,619
Number of Sequences: 37544
Number of extensions: 459205
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)