Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m03
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.            36   0.23 
AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AY771620-1|AAX14815.1| 1318|Homo sapiens olfactorin short isofor...    30   8.7  
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform...    30   8.7  
AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.     30   8.7  
AB051811-1|BAD23799.1| 1246|Homo sapiens Uromodulin-like protein...    30   8.7  
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein...    30   8.7  

>AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.
          Length = 274

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = -3

Query: 675 ICLGFCDSKCMCSGDKYQLVGENGFAARPYTCLHIR-TMRIRACTCVRCVYVRARAYD-- 505
           +C+  C   C C      + G      R Y C H+R  + + AC CV C++VR   Y   
Sbjct: 88  VCICVCAHVCTCVHSFVYVCGCVHVGMRVYLCEHVRMCVSLCACLCV-CIHVRVCIYACI 146

Query: 504 ---AYTCVHV 484
              A  C+H+
Sbjct: 147 LVCALVCMHI 156


>AK124627-1|BAC85906.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42636 fis, clone BRACE3023912. ).
          Length = 175

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 484 HVHASIRIVRTCTHVYASYARARTYTHRTYVQARVRTC 597
           HVH +     +CT  Y  +  ART TH T+ QA +  C
Sbjct: 10  HVHITHTSRHSCTDSYTGHVPARTCTH-THAQALMHRC 46


>AY771620-1|AAX14815.1| 1318|Homo sapiens olfactorin short isoform
            precursor protein.
          Length = 1318

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224  IPEINSLMTHPKCNVTECNKPS-LRASYWTEC 316
            IPE +  ++HP CNV+  N    L  + W+EC
Sbjct: 1012 IPESSLYLSHPSCNVSHSNGTHVLLEAGWSEC 1043


>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
            precursor protein.
          Length = 1446

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224  IPEINSLMTHPKCNVTECNKPS-LRASYWTEC 316
            IPE +  ++HP CNV+  N    L  + W+EC
Sbjct: 1140 IPESSLYLSHPSCNVSHSNGTHVLLEAGWSEC 1171


>AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +1

Query: 478 CMHVHASIRIV------RTCTHVYASYARARTYTHRTYVQARVRTCGKSVLPDKLIFVAA 639
           C HVHAS  +        T TH + ++   RT+ H  +  A   TC  ++       +A 
Sbjct: 118 CAHVHASSHVWTDVYTDHTHTHAHNAHMHTRTHAH-LHTHAHTSTCAHTLAHIHTCTLAL 176

Query: 640 THTF*VTKTKTNIINYT 690
            HT     T T  + +T
Sbjct: 177 MHTHAHIYTCTRTLAHT 193


>AB051811-1|BAD23799.1| 1246|Homo sapiens Uromodulin-like protein
            protein.
          Length = 1246

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224  IPEINSLMTHPKCNVTECNKPS-LRASYWTEC 316
            IPE +  ++HP CNV+  N    L  + W+EC
Sbjct: 940  IPESSLYLSHPSCNVSHSNGTHVLLEAGWSEC 971


>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
            protein.
          Length = 1374

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224  IPEINSLMTHPKCNVTECNKPS-LRASYWTEC 316
            IPE +  ++HP CNV+  N    L  + W+EC
Sbjct: 1068 IPESSLYLSHPSCNVSHSNGTHVLLEAGWSEC 1099


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,632,916
Number of Sequences: 237096
Number of extensions: 2713720
Number of successful extensions: 5098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5065
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)