Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m03
         (812 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3747|AAN12210.1|  170|Drosophila melanogaster CG11100-P...    30   3.3  
AY060486-1|AAL25525.1|  170|Drosophila melanogaster SD10763p pro...    30   4.3  
AY051469-1|AAK92893.1|  446|Drosophila melanogaster GH13594p pro...    29   7.6  
AE014297-1363|AAF54686.3|  446|Drosophila melanogaster CG14718-P...    29   7.6  

>AE014296-3747|AAN12210.1|  170|Drosophila melanogaster CG11100-PA,
           isoform A protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 559 YTCVHVRTMRIRACTCVRCVYLRARAYKAYTERQHILFSVSIKSMGTFG 413
           Y C+++   ++R    +RC+Y     Y     R  ILF+    S   FG
Sbjct: 116 YVCMYIWVKKVRLIEVLRCLYRAFLKYSTVETRGLILFAFIFVSQQWFG 164


>AY060486-1|AAL25525.1|  170|Drosophila melanogaster SD10763p
           protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 559 YTCVHVRTMRIRACTCVRCVYLRARAYKAYTERQHILFSVSIKSMGTFG 413
           Y C+++   ++R    +RC+Y     Y     R  ILF+    S   FG
Sbjct: 116 YVCMYIWVNKVRLIEVLRCLYRAFLKYSTVETRGLILFAFIFVSQQWFG 164


>AY051469-1|AAK92893.1|  446|Drosophila melanogaster GH13594p
           protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 256 WMCH--QGINFWYPKKLRKKSVLKSDETK 176
           W+C     +NFWY  K  +   L+SDE K
Sbjct: 398 WLCKICYNMNFWYRAKCNRCHALRSDEMK 426


>AE014297-1363|AAF54686.3|  446|Drosophila melanogaster CG14718-PA
           protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 256 WMCH--QGINFWYPKKLRKKSVLKSDETK 176
           W+C     +NFWY  K  +   L+SDE K
Sbjct: 398 WLCKICYNMNFWYRAKCNRCHALRSDEMK 426


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,155,284
Number of Sequences: 53049
Number of extensions: 856392
Number of successful extensions: 1987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)