Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m03
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine r...    33   0.32 
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z83129-11|CAB63323.2|  131|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   5.2  
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr...    29   5.2  
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr...    29   5.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   5.2  
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.       29   5.2  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    28   9.1  

>AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 6 protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 300 LARKLGLLHSVTLHFGCVIKELISGIPRNCG 208
           LA  LG+L ++ LH  C +   IS IPRNCG
Sbjct: 137 LAIGLGMLENLILHLFCTLH--ISAIPRNCG 165


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 75  KLHDFTKNNGTLLHISQNKQ-INTVYFNEKHVKKSLVSSDFRTDFFRNFLGYQKLI 239
           +++   + NGT +++ + K  +   + N+K+ KKS   +  R+ FF+ F  ++KL+
Sbjct: 23  EMNKMNEMNGTKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRFFQTFNRFEKLL 78


>U88184-12|AAM98020.1|  570|Caenorhabditis elegans Hypothetical
           protein F36H5.2b protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 511 VRCVYLRARAYKAYTERQHILFSVSIKSMGTFGRLHIPNCHLSVFFLYH 365
           V C+ +R R +  + +R +I + + +K +  F  +H+ +C  +  F YH
Sbjct: 55  VSCIEIRERRFSKFEKRFNIPWRIELKRVSGFLEIHL-HCGENATFDYH 102


>Z83129-11|CAB63323.2|  131|Caenorhabditis elegans Hypothetical
           protein W06G6.11 protein.
          Length = 131

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 193 KSDETKDFLTCFSLK*TVLICLFCDICSNVPLFFVKSCNL 74
           K D+  +  +C + +   L CL C+IC++    FV  C +
Sbjct: 87  KEDKNAEESSCCTAEKCCLACLGCEICTSWVSIFVDCCKI 126


>Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical
           protein T28F4.4 protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 492 RKYTHRTHVHARIRIVRTCTHV-YASYVCASTCTDVRQIRSPRQADICRRY 641
           R  THRTH++   +++    HV   + +CAS C  ++  +S +Q D C  +
Sbjct: 358 RMSTHRTHIY---QLLDLQFHVRILTGLCASPCRMLKYAKSCKQCDKCSEH 405


>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
           protein 44, isoform g protein.
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
           protein 44, isoform a protein.
          Length = 2039

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
           protein 44, isoform e protein.
          Length = 1841

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
           protein 44, isoform c protein.
          Length = 1867

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
           protein 44, isoform f protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
           protein.
          Length = 1815

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
           protein.
          Length = 1867

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
           protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
          Length = 1786

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 527 YTHRTHVHARIRIVRMCKHVYGRAANPFSPTS*YLSPLHIHFESQKPRQI*LIIHY 694
           Y    HV A    VR+ K +  R+A+P S      +PLHI  +  + + + L++ Y
Sbjct: 359 YLTPLHVAAHCGHVRVAKLLLDRSADPNSRALNGFTPLHIACKKNRIKVVELLLKY 414


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 455 VLALCIGLVCTCTQVYASYARARTYTHRTHVHARIRIVRMCKHVYGRAANPFS 613
           ++    GL+ TC Q +  +   R+Y   T +++R   V   K  +G   NPFS
Sbjct: 151 IIVFTCGLL-TCYQHFEYFCLVRSYCRETQLYSRCLPVNAEKW-FGHRPNPFS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,701,757
Number of Sequences: 27780
Number of extensions: 454216
Number of successful extensions: 1151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)