Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m03
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 632 TNISLSGRTDLPHVR 588
           + ISL  RTDLP VR
Sbjct: 288 STISLDSRTDLPKVR 302



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/33 (18%), Positives = 16/33 (48%)
 Frame = +2

Query: 260 CNVTECNKPSLRASYWTECSVKRNGRLCSIRNI 358
           CN+  C+  ++      + S +R+  +C +  +
Sbjct: 359 CNIVSCSPQTVHPETIIDVSRRRSSLICDVYGV 391


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 402 MCNLPNVPIDLIETEKRMCWRSV*ALYARARKYTH 506
           +C+LP   +  +ET   + W S    +     YTH
Sbjct: 166 VCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTH 200


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 557 YVRARAYDAYTCVHVRTMRILAC 489
           +   R Y AY+  HVR+ R  +C
Sbjct: 429 FASGRYYSAYSLHHVRSSRESSC 451


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 113 TYITKQTN*YSLF 151
           TY+T+Q N Y LF
Sbjct: 30  TYVTRQKNIYELF 42


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 113 TYITKQTN*YSLF 151
           TY+T+Q N Y LF
Sbjct: 30  TYVTRQKNIYELF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,791
Number of Sequences: 438
Number of extensions: 5368
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)