Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m02
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...   103   3e-23
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.27 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    27   3.4  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   4.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.9  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   7.8  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score =  103 bits (247), Expect = 3e-23
 Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
 Frame = -3

Query: 487 FVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLTYKSCSLS-KLTDN 311
           FVA+  F +K+SDP +GGTYMT+LNT+SNLG +WP  + L   D LT  SCS +  LT  
Sbjct: 393 FVALGVFHSKISDPHIGGTYMTILNTLSNLGGSWPQYVMLRMADLLTVSSCSTAPHLT-- 450

Query: 310 KCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGF-LWLQWGRPTINRLQRLPPSAWQ 134
            CS+  + + C++ GGTC+ + DGYY+ +++ + L   + +    P + RL + P S+W 
Sbjct: 451 -CSADAQKKECQALGGTCLYKRDGYYLTSIVGIFLAISICVSLITPVVRRLTKAPISSWH 509

Query: 133 I 131
           I
Sbjct: 510 I 510


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 382 STLALWAIDHLTYKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIET-----VI 218
           STL LWA  +++   C + +  +N C S + A L +   G      D  Y+ +     + 
Sbjct: 695 STLILWAYGYVSDGRCEMLEPGNNDCKSQLNAYLMQMRTGLSEKAKDHVYVRSKTLPLLK 754

Query: 217 CVILGFLWLQWG 182
           CVI      +WG
Sbjct: 755 CVIDVLCPARWG 766


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 560 WTFILLSKHTHVTVCLSSDMPLLYVCGGDGILCKS 456
           W F    K+  V++ L  D+ LL  CGG   L K+
Sbjct: 769 WNFDFRLKNARVSIFLDDDVSLLLDCGGFTTLKKT 803


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 768 KLQA*YCICRTKTKLSSEQNPK 833
           KL   Y IC  K + SSEQNP+
Sbjct: 71  KLADTYSICNPKFQFSSEQNPR 92


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 205 GFLWLQWGRPTINRLQRLPPSAWQISR 125
           G + L WG P   RLQ LP  A  + R
Sbjct: 237 GLVILAWGTPAAKRLQGLPLKAHYVLR 263


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 198 KKPRITHITVSM*YPSISVT 257
           +KPRI H+ V+  YP+I +T
Sbjct: 618 EKPRIYHLDVASMYPNIMIT 637


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 210 ITHITVSM*YPSISVTQVPPSDLHNSASTVEEHLLSVNLDSEQLLYVK*SIAQ 368
           ++H++    + ++ VT+ P    H+SA T+ EH  +V  D  + L     + Q
Sbjct: 213 LSHVSHRTMHDALDVTKAPVIFSHSSAYTLTEHERNVRDDVLERLKTNGGVVQ 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,251
Number of Sequences: 5004
Number of extensions: 70385
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)