Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m02
         (852 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88152-1|BAA20072.1|  549|Homo sapiens acetyl-coenzyme A transpo...   176   1e-43
BC014416-1|AAH14416.1|  549|Homo sapiens SLC33A1 protein protein.     176   1e-43
AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein.                 33   1.7  
AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein.              33   1.7  
AF534825-1|AAO15023.1|  166|Homo sapiens TREM-like transcript 3 ...    32   2.3  

>D88152-1|BAA20072.1|  549|Homo sapiens acetyl-coenzyme A
           transporter protein.
          Length = 549

 Score =  176 bits (428), Expect = 1e-43
 Identities = 86/194 (44%), Positives = 115/194 (59%)
 Frame = -3

Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXXXXX 527
           QII+P+I++K+T GP PL+ + KA                +TP +    G          
Sbjct: 356 QIILPLIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVL 415

Query: 526 XXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLT 347
             Y  HQ  +Y M+V++MAF AKVSDP +GGTYMTLLNTVSNLG NWPST+ALW +D LT
Sbjct: 416 LSYALHQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLT 475

Query: 346 YKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRPTIN 167
            K C     ++  C +    ELCK  GG+CVT +DGYY+E++ICV +GF W  +  P   
Sbjct: 476 VKEC--VGASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFK 533

Query: 166 RLQRLPPSAWQISR 125
           +LQ    S+W+  R
Sbjct: 534 KLQDEGSSSWKCKR 547



 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           ++ TAK+GF AADAV+GLKLVE GVP+E
Sbjct: 316 LILTAKIGFSAADAVTGLKLVEEGVPKE 343


>BC014416-1|AAH14416.1|  549|Homo sapiens SLC33A1 protein protein.
          Length = 549

 Score =  176 bits (428), Expect = 1e-43
 Identities = 86/194 (44%), Positives = 115/194 (59%)
 Frame = -3

Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXXXXX 527
           QII+P+I++K+T GP PL+ + KA                +TP +    G          
Sbjct: 356 QIILPLIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVL 415

Query: 526 XXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLT 347
             Y  HQ  +Y M+V++MAF AKVSDP +GGTYMTLLNTVSNLG NWPST+ALW +D LT
Sbjct: 416 LSYALHQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLT 475

Query: 346 YKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRPTIN 167
            K C     ++  C +    ELCK  GG+CVT +DGYY+E++ICV +GF W  +  P   
Sbjct: 476 VKEC--VGASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFK 533

Query: 166 RLQRLPPSAWQISR 125
           +LQ    S+W+  R
Sbjct: 534 KLQDEGSSSWKCKR 547



 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           ++ TAK+GF AADAV+GLKLVE GVP+E
Sbjct: 316 LILTAKIGFSAADAVTGLKLVEEGVPKE 343


>AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein.
          Length = 3526

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 726  ASKAKIFTWDTGFNKLQA*YCICRTKTKLSSEQNPKLIY 842
            A + K F  DTG N+ Q+ YC   TKT L++    K ++
Sbjct: 1925 AEEFKAFAADTGMNRSQSEYCNVGTKTYLTNHPAKKFVF 1963


>AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein.
          Length = 2407

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 726  ASKAKIFTWDTGFNKLQA*YCICRTKTKLSSEQNPKLIY 842
            A + K F  DTG N+ Q+ YC   TKT L++    K ++
Sbjct: 1925 AEEFKAFAADTGMNRSQSEYCNVGTKTYLTNHPAKKFVF 1963


>AF534825-1|AAO15023.1|  166|Homo sapiens TREM-like transcript 3
           protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -3

Query: 427 MTLLNTVSNLGTNWPSTLALWAIDHLTYKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTE 248
           +T+L  VS +    P+T   W +  L   +    +L +NK   + E+ L KS    C+  
Sbjct: 86  VTVLRDVSLVVFAAPTTSPTWTLTWLPTNTDGAIQLQENKLRDSTESALWKSSAPICLGS 145

Query: 247 IDGYYIETVICVIL 206
                + +V+C +L
Sbjct: 146 AGPKLLVSVLCGLL 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,672,505
Number of Sequences: 237096
Number of extensions: 2868663
Number of successful extensions: 5435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5431
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)